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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004446

染色体: Chr01 坐标: 62568959-62571900 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004446
名称SmilChr01G004446
描述pentatricopeptide repeat-containing protein At3g14730-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向62568959 - 62571900 / +

ID 对照

NCBI Gene IDLOC131002750
GeneID131002750
locus_tag-
NCBI NameLOC131002750
原始查询SmilChr01G004446

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At3g14730-like
产物pentatricopeptide repeat-containing protein At3g14730-like
ArabidopsisAT3G14730 (AT3G14730)
Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820701]
identity=49; qcov=0.909; evalue=0; confidence=high
RiceOs01g0818200 (P0454H12.27)
-
identity=37.7; qcov=0.913; evalue=1.7e-120; confidence=medium
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131002750

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057785206.1
2 Nucleus 细胞核 0.00000 XP_057785206.1
3 Chromosome 染色体 0.00000 XP_057785206.1
4 Centromere 着丝粒 0.00000 XP_057785206.1
5 Chromatin 染色质 0.00000 XP_057785206.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:62569199 C T EMS_canonical_SNV CDS_variant 1 D11
Chr1:62569640 G A EMS_canonical_SNV CDS_variant 2 B115,B20
Chr1:62569796 TG T 1bp_deletion frameshift_variant 1 C60
Chr1:62569796 TG T 1bp_deletion CDS_variant 1 C60
Chr1:62569808 C T EMS_canonical_SNV CDS_variant 1 D10
Chr1:62569876 G A EMS_canonical_SNV CDS_variant 2 B108,C23
Chr1:62570435 GTT G 2bp_deletion frameshift_variant 3 A13,B130,B62
Chr1:62570435 GTT G 2bp_deletion CDS_variant 3 A13,B130,B62
Chr1:62570870 C T EMS_canonical_SNV CDS_variant 1 B104

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785206.1
624 aa
N
1
312
624
PPR
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR
PPR
E_motif
C
PF01535 PPR 38-63 aa PF01535 PPR 69-93 aa PF13041 PPR_2 99-145 aa PF01535 PPR 102-131 aa PF01535 PPR 171-193 aa PF13041 PPR_2 198-245 aa PF01535 PPR 200-230 aa PF01535 PPR 273-299 aa PF01535 PPR 301-331 aa PF01535 PPR 376-401 aa PF01535 PPR 405-433 aa PF01535 PPR 477-500 aa PF20431 E_motif 519-581 aa
XP_057785207.1
624 aa
N
1
312
624
PPR
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
PPR
PPR
PPR
E_motif
C
PF01535 PPR 38-63 aa PF01535 PPR 69-93 aa PF13041 PPR_2 99-145 aa PF01535 PPR 102-131 aa PF01535 PPR 171-193 aa PF13041 PPR_2 198-245 aa PF01535 PPR 200-230 aa PF01535 PPR 273-299 aa PF01535 PPR 301-331 aa PF01535 PPR 376-401 aa PF01535 PPR 405-433 aa PF01535 PPR 477-500 aa PF20431 E_motif 519-581 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057785206.1 Pfam PF01535 PPR Repeat 38 63 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF01535 PPR Repeat 69 93 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF13041 PPR_2 Repeat 99 145 2.1e-58 194.9 PPR repeat family
XP_057785206.1 Pfam PF01535 PPR Repeat 102 131 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF01535 PPR Repeat 171 193 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF13041 PPR_2 Repeat 198 245 2.1e-58 194.9 PPR repeat family
XP_057785206.1 Pfam PF01535 PPR Repeat 200 230 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF01535 PPR Repeat 273 299 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF01535 PPR Repeat 301 331 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF01535 PPR Repeat 376 401 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF01535 PPR Repeat 405 433 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF01535 PPR Repeat 477 500 8.7e-52 170.5 PPR repeat
XP_057785206.1 Pfam PF20431 E_motif Repeat 519 581 1.2e-19 71.0 E motif
XP_057785207.1 Pfam PF01535 PPR Repeat 38 63 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF01535 PPR Repeat 69 93 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF13041 PPR_2 Repeat 99 145 2.1e-58 194.9 PPR repeat family
XP_057785207.1 Pfam PF01535 PPR Repeat 102 131 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF01535 PPR Repeat 171 193 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF13041 PPR_2 Repeat 198 245 2.1e-58 194.9 PPR repeat family
XP_057785207.1 Pfam PF01535 PPR Repeat 200 230 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF01535 PPR Repeat 273 299 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF01535 PPR Repeat 301 331 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF01535 PPR Repeat 376 401 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF01535 PPR Repeat 405 433 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF01535 PPR Repeat 477 500 8.7e-52 170.5 PPR repeat
XP_057785207.1 Pfam PF20431 E_motif Repeat 519 581 1.2e-19 71.0 E motif

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057929223.1
GAAACAAACTTCTTTTAATATTCTCAAAACGGGCCTACATAGGCCCAACTAGAAAACTTACAATCGAAACCAGAAAGAAATATGGAAAGAGCCCAAAAAGCTAATCTCTCTCTCCCTCTCCGGCCGCCGTTAACGAGGCGGCTCCTCCACGTTTCTGCCGCCATTCTCACCTAAGAACCTTCATTGAAAAACCCTACTAGAGATGAATAAAAGAAAAGTGTTATTGGCAATGCATCTGCACAAAACTCATTTCAAATTCT...
XM_057929224.1
GAAACAAACTTCTTTTAATATTCTCAAAACGGGCCTACATAGGCCCAACTAGAAAACTTACAATCGAAACCAGAAAGAAATATGGAAAGAGCCCAAAAAGCTAATCTCTCTCTCCCTCTCCGGCCGCCGTTAACGAGGCGGCTCCTCCACGTTTCTGCCGCCATTCTCACCTAAGAACCTTCATTGAAAAACCCTACTAGAGATGAATAAAAGAAAAGTGTTATTGGCAATGCATCTGCACAAAACTCATTTCAAATTCT...

CDS

2 records

下载 CDS FASTA
LOC131002750
ATGAATAAAAGAAAAGTGTTATTGGCAATGCATCTGCACAAAACTCATTTCAAATTCTACCGCAAATTCTCTTCCAGCTCAACTCCACCCCCAAATATCCAATCATGCATCGCATTGCTTCAATCATGCGCACAGAATCGAGAGCTTTCGAAGGGTAGAAAAGTCCATTCGCGCATGATCGTCAGCGGCCATCTTTCTTCCCCTGTCTCCGCCACTAGCCTCATCCATATGTACTCCAAATGCAGCTCTGTTTCCGATGC...
LOC131002750
ATGAATAAAAGAAAAGTGTTATTGGCAATGCATCTGCACAAAACTCATTTCAAATTCTACCGCAAATTCTCTTCCAGCTCAACTCCACCCCCAAATATCCAATCATGCATCGCATTGCTTCAATCATGCGCACAGAATCGAGAGCTTTCGAAGGGTAGAAAAGTCCATTCGCGCATGATCGTCAGCGGCCATCTTTCTTCCCCTGTCTCCGCCACTAGCCTCATCCATATGTACTCCAAATGCAGCTCTGTTTCCGATGC...

Protein

2 records

下载 Protein FASTA
XP_057785206.1
MNKRKVLLAMHLHKTHFKFYRKFSSSSTPPPNIQSCIALLQSCAQNRELSKGRKVHSRMIVSGHLSSPVSATSLIHMYSKCSSVSDAVSVFNSSKDIHNVFVYNSIIAGLTVNNLPFEAFEFYHKMRSIGVEPDKFTFPCAIKACLDVSDLRNIHGLVHKFNLNFDLFIGSALLHCYLKFELMDDAVQLFERLPVRDDIVLWNAMINGFVQIGEFGKGLLIFRRMVDMGLMPNMFTVTGVLSALAFSAEVYNGRVIHAYA...
XP_057785207.1
MNKRKVLLAMHLHKTHFKFYRKFSSSSTPPPNIQSCIALLQSCAQNRELSKGRKVHSRMIVSGHLSSPVSATSLIHMYSKCSSVSDAVSVFNSSKDIHNVFVYNSIIAGLTVNNLPFEAFEFYHKMRSIGVEPDKFTFPCAIKACLDVSDLRNIHGLVHKFNLNFDLFIGSALLHCYLKFELMDDAVQLFERLPVRDDIVLWNAMINGFVQIGEFGKGLLIFRRMVDMGLMPNMFTVTGVLSALAFSAEVYNGRVIHAYA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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