Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004455`

染色体: Chr01 坐标: 62668522-62671856 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004455`
名称	SmilChr01G004455
描述	F-box protein At2g32560-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62668522 - 62671856 / `-`

ID 对照

NCBI Gene ID	`LOC131002843`
GeneID	`131002843`
locus_tag	`-`
NCBI Name	`LOC131002843`
原始查询	`SmilChr01G004455`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	F-box protein At2g32560-like
产物	F-box protein At2g32560-like
Arabidopsis	`AT2G32560` (AT2G32560) F-box family protein [Source:NCBI gene (formerly Entrezgene);Acc:817817] identity=57; qcov=0.773; evalue=1.67e-99; confidence=high
Rice	`Os01g0281000` (OsFbox006) - identity=50; qcov=0.779; evalue=3.57e-88; confidence=high
GO	GO:0005515 (protein binding)
KEGG	-
Pfam	PF00646 (F-box); PF12937 (F-box-like)
InterPro	-
eggNOG	-
NR	GeneID:131002843

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057785300.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057785317.1`
3	Chloroplast	叶绿体	0.20000	`XP_057785325.1`
4	Chromosome	染色体	0.00000	`XP_057785300.1`
5	Centromere	着丝粒	0.00000	`XP_057785300.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62668967`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B36
`Chr1:62670144`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:62670750`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	D3
`Chr1:62670750`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D3
`Chr1:62671098`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr1:62671486`	`AT`	`A`	1bp_deletion	frameshift_variant	3	B100,B137,C37
`Chr1:62671486`	`AT`	`A`	1bp_deletion	CDS_variant	3	B100,B137,C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785300.1

383 aa

192

383

F-box

F-box-like

PF00646 F-box 85-127 aa PF12937 F-box-like 86-129 aa

XP_057785309.1

372 aa

186

372

F-box

F-box-like

PF00646 F-box 74-116 aa PF12937 F-box-like 75-118 aa

XP_057785317.1

342 aa

171

342

F-box

F-box-like

PF00646 F-box 85-127 aa PF12937 F-box-like 86-129 aa

XP_057785325.1

331 aa

166

331

F-box

F-box-like

PF00646 F-box 74-116 aa PF12937 F-box-like 75-118 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785300.1`	Pfam	`PF00646`	F-box	Domain	85	127	1.7e-07	31.6	F-box domain
`XP_057785300.1`	Pfam	`PF12937`	F-box-like	Domain	86	129	9.7e-07	29.2	F-box-like
`XP_057785309.1`	Pfam	`PF00646`	F-box	Domain	74	116	1.6e-07	31.6	F-box domain
`XP_057785309.1`	Pfam	`PF12937`	F-box-like	Domain	75	118	9e-07	29.3	F-box-like
`XP_057785317.1`	Pfam	`PF00646`	F-box	Domain	85	127	1.5e-07	31.8	F-box domain
`XP_057785317.1`	Pfam	`PF12937`	F-box-like	Domain	86	129	8.4e-07	29.4	F-box-like
`XP_057785325.1`	Pfam	`PF00646`	F-box	Domain	74	116	1.4e-07	31.8	F-box domain
`XP_057785325.1`	Pfam	`PF12937`	F-box-like	Domain	75	118	7.8e-07	29.5	F-box-like

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057929317.1
AAGGAAAACTATTCTTTTAGTGAAAGTGAAGTCTTGACAATCCAGATTAAAGCAAAAAAGATGTCGATGCCTTGTTTGTGTTCCTAGTTTGTCTTTTGATTTAAACAAAGACGTTTCACTTTGTTTTCACCAAAGGTTTTGGCAATAGATTTGGCCTAGACTTTTGGTAATACTCCACACCTTAGCAAAGTAAACGGCTCAATTCCCCTAGATTTTATTCCTCTATTTAAAAATATTTTATAAAATATTTAAGAATAAAC...

XM_057929334.1
AAGGAAAACTATTCTTTTAGTGAAAGTGAAGTCTTGACAATCCAGATTAAAGCAAAAAAGATGTCGATGCCTTGTTTGTGTTCCTAGTTTGTCTTTTGATTTAAACAAAGACGTTTCACTTTGTTTTCACCAAAGGTTTTGGCAATAGATTTGGCCTAGACTTTTGGTAATACTCCACACCTTAGCAAAGTAAACGGCTCAATTCCCCTAGATTTTATTCCTCTATTTAAAAATATTTTATAAAATATTTAAGAATAAAC...

CDS

4 records

下载 CDS FASTA

LOC131002843
ATGCCACATAAATTGTCATTTCTCAAGCCAACTCCAACTCCCAAAATGGAATCCAGAGTGTGGAGATTCCCCTTGATTTTTAGGGAAATTCTTTTGCTGCTGGCCAAGAAAAGAAAGGCTCTCATCAAAGTATTTCAAGCTCCATCACTCAAGAAAATGTTGAGCCCTAAATATGTGATTCTTGAGGAGGATGAGAAGAAACAAGAAAGTTGCATCTCTCTACTTGATCTCCCTGATTTGGTATTGGACTGCATTCTTGA...

LOC131002843
ATGCTGTTTTTCCTGGTTTCTTGTGTATCTTTTGTACTACTTTCTCAGTCATTTCTCAAGCCAACTCCAACTCCCAAAATGGAATCCAGAGTGTGGAGATTCCCCTTGATTTTTAGGGAAATTCTTTTGCTGCTGGCCAAGAAAAGAAAGGCTCTCATCAAAGTATTTCAAGCTCCATCACTCAAGAAAATGTTGAGCCCTAAATATGTGATTCTTGAGGAGGATGAGAAGAAACAAGAAAGTTGCATCTCTCTACTTGA...

Protein

4 records

下载 Protein FASTA

XP_057785300.1
MLFFLVSCVSFVLLSQSFLKPTPTPKMESRVWRFPLIFREILLLLAKKRKALIKVFQAPSLKKMLSPKYVILEEDEKKQESCISLLDLPDLVLDCILEKLSPAELCSMAGVCFSLRDKCTSDHLWQKLLKRKWGEAIGHAAYREWQSQIPSLQFLHFTEKRSKFLPFSTLFRCKLEMKEKKNTSLPYNSLMSCYLALESGKFWFPAQVFNRENGHVGFMLSCYDAQLSYGSTTDNFVARYKAQGRSMIEEGIEWKRIRAP...

XP_057785309.1
MPHKLSFLKPTPTPKMESRVWRFPLIFREILLLLAKKRKALIKVFQAPSLKKMLSPKYVILEEDEKKQESCISLLDLPDLVLDCILEKLSPAELCSMAGVCFSLRDKCTSDHLWQKLLKRKWGEAIGHAAYREWQSQIPSLQFLHFTEKRSKFLPFSTLFRCKLEMKEKKNTSLPYNSLMSCYLALESGKFWFPAQVFNRENGHVGFMLSCYDAQLSYGSTTDNFVARYKAQGRSMIEEGIEWKRIRAPSVDTPANVLHI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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