当前解析结果
SmilChr01G004457| 统一新 Gene ID | SmilChr01G004457 |
|---|---|
| 名称 | SmilChr01G004457 |
| 描述 | pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 62691785 - 62695137 / + |
| NCBI Gene ID | LOC131002890 |
|---|---|
| GeneID | 131002890 |
| locus_tag | - |
| NCBI Name | LOC131002890 |
| 原始查询 | SmilChr01G004457 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like |
| 产物 | pentatricopeptide repeat-containing protein At1g80270%2C mitochondrial-like |
| Arabidopsis | AT1G80270 (PPR596)PENTATRICOPEPTIDE REPEAT 596 [Source:NCBI gene (formerly Entrezgene);Acc:844367] identity=51.1; qcov=0.969; evalue=0; confidence=high |
| Rice | Os12g0170100- identity=44; qcov=1.03; evalue=0; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0005739 (mitochondrion) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13812 (PPR_3) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002890 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057785370.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057785370.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057785370.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057785370.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057785370.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:62692715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:62692795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B124,B76 |
Chr1:62693637 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B65,C52 |
Chr1:62693761 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,B61 |
Chr1:62693992 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr1:62694254 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B107 |
Chr1:62694254 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B107 |
Chr1:62694325 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B128,B61 |
Chr1:62694418 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B36,D11 |
Chr1:62694493 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr1:62694589 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,B27,C47 |
Chr1:62694728 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C33 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057785370.1PF13812
PPR_3 291-335 aa
PF01535
PPR 464-492 aa
PF01535
PPR 498-525 aa
PF01535
PPR 534-562 aa
PF13812
PPR_3 534-579 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057785370.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 291 | 335 | 1.1e-20 | 74.2 | Pentatricopeptide repeat domain |
XP_057785370.1 |
Pfam | PF01535 |
PPR | Repeat | 464 | 492 | 1.7e-19 | 69.3 | PPR repeat |
XP_057785370.1 |
Pfam | PF01535 |
PPR | Repeat | 498 | 525 | 1.7e-19 | 69.3 | PPR repeat |
XP_057785370.1 |
Pfam | PF01535 |
PPR | Repeat | 534 | 562 | 1.7e-19 | 69.3 | PPR repeat |
XP_057785370.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 534 | 579 | 1.1e-20 | 74.2 | Pentatricopeptide repeat domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。