当前解析结果
SmilChr01G004461| 统一新 Gene ID | SmilChr01G004461 |
|---|---|
| 名称 | SmilChr01G004461 |
| 描述 | uncharacterized SmilChr01G004461 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 62713537 - 62716851 / + |
| NCBI Gene ID | LOC131002945 |
|---|---|
| GeneID | 131002945 |
| locus_tag | - |
| NCBI Name | LOC131002945 |
| 原始查询 | SmilChr01G004461 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os01g0268600; species=rice; confidence=high |
| 产物 | hit=Os01g0268600; species=rice; confidence=high |
| Arabidopsis | AT3G45940 (AT3G45940)Glycosyl hydrolases family 31 protein [Source:NCBI gene (formerly Entrezgene);Acc:823737] identity=23; qcov=0.678; evalue=8.32e-25; confidence=weak |
| Rice | Os01g0268600- identity=52; qcov=1.1; evalue=0; confidence=high |
| GO | GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005975 (carbohydrate metabolic process); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF01055 (Glyco_hydro_31_2nd); PF21365 (Glyco_hydro_31_3rd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131002945 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057785421.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 0.60000 | XP_057785421.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057785421.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057785421.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057785421.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:62713692 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr1:62713692 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B74 |
Chr1:62713694 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | B74 |
Chr1:62713694 |
TG |
T |
1bp_deletion | CDS_variant | 1 | B74 |
Chr1:62713777 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C6 |
Chr1:62713952 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:62713972 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr1:62714401 |
AG |
A |
1bp_deletion | frameshift_variant | 11 | A20,A4,A6,B81,B83,C12,C38,C5,C50,C53,C59 |
Chr1:62714406 |
G |
GC |
1bp_insertion | frameshift_variant | 2 | B115,B20 |
Chr1:62714406 |
G |
GC |
1bp_insertion | CDS_variant | 2 | B115,B20 |
Chr1:62714454 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:62714832 |
AC |
A |
1bp_deletion | frameshift_variant | 13 | A23,A7,B114,B121,B56,B87,C16,C17,C18,C36,C54,C7,D6 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057785421.1PF01055
Glyco_hydro_31_2nd 409-710 aa
PF21365
Glyco_hydro_31_3rd 740-829 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057785421.1 |
Pfam | PF01055 |
Glyco_hydro_31_2nd | Domain | 409 | 710 | 3.1e-38 | 132.6 | Glycosyl hydrolases family 31 TIM-barrel domain |
XP_057785421.1 |
Pfam | PF21365 |
Glyco_hydro_31_3rd | Domain | 740 | 829 | 2.4e-17 | 63.9 | Glycosyl hydrolase family 31 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。