当前解析结果
SmilChr01G004466| 统一新 Gene ID | SmilChr01G004466 |
|---|---|
| 名称 | SmilChr01G004466 |
| 描述 | putative NAC domain-containing protein 94 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 62754439 - 62755737 / + |
| NCBI Gene ID | LOC131003028 |
|---|---|
| GeneID | 131003028 |
| locus_tag | - |
| NCBI Name | LOC131003028 |
| 原始查询 | SmilChr01G004466 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative NAC domain-containing protein 94 |
| 产物 | putative NAC domain-containing protein 94 |
| Arabidopsis | AT5G53950 (CUC2)NAC (No Apical Meristem) domain transcriptional regulator superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835478] identity=33.1; qcov=0.689; evalue=4.51e-17; confidence=low |
| Rice | Os06g0344900 (OMTN5)- identity=33.1; qcov=0.646; evalue=2.5e-17; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF02365 (NAM) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131003028 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057785481.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057785481.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057785481.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057785481.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057785481.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:62754555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:62754598 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B79 |
Chr1:62754626 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B91 |
Chr1:62755194 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr1:62755218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr1:62755252 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | C50 |
Chr1:62755252 |
TC |
T |
1bp_deletion | CDS_variant | 1 | C50 |
Chr1:62755283 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B104,B64 |
Chr1:62755283 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B104,B64 |
Chr1:62755303 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C5 |
Chr1:62755303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C5 |
Chr1:62755306 |
GC |
G |
1bp_deletion | frameshift_variant | 23 | A11,A18,A22,B105,B108,B131,B133,B138,B2,B22,B29,B41,B44,B50,B75,C12,C14,C23,C26,C30,C33,C59,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057785481.1PF02365
NAM 52-176 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057785481.1 |
Pfam | PF02365 |
NAM | Family | 52 | 176 | 6e-29 | 101.7 | No apical meristem (NAM) protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。