Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004486`

染色体: Chr01 坐标: 62987204-62991023 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004486`
名称	SmilChr01G004486
描述	uncharacterized SmilChr01G004486
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	62987204 - 62991023 / `-`

ID 对照

NCBI Gene ID	`LOC131003690`
GeneID	`131003690`
locus_tag	`-`
NCBI Name	`LOC131003690`
原始查询	`SmilChr01G004486`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Single-stranded nucleic acid binding R3H protein [Source:NCBI gene (formerly Entrezgene);Acc:824835]; symbol=AT3G56680; hit=AT3G56680; species=arabidopsis; confidence=high
产物	Single-stranded nucleic acid binding R3H protein [Source:NCBI gene (formerly Entrezgene);Acc:824835]; symbol=AT3G56680; hit=AT3G56680; species=arabidopsis; confidence=high
Arabidopsis	`AT3G56680` (AT3G56680) Single-stranded nucleic acid binding R3H protein [Source:NCBI gene (formerly Entrezgene);Acc:824835] identity=51.8; qcov=0.955; evalue=1.6e-105; confidence=high
Rice	`Os05g0411600` - identity=44.9; qcov=0.913; evalue=3.69e-83; confidence=medium
GO	GO:0003676 (nucleic acid binding)
KEGG	-
Pfam	PF01424 (R3H); PF12752 (SUZ)
InterPro	-
eggNOG	-
NR	GeneID:131003690

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057786222.1`
2	Nucleus	细胞核	0.60000	`XP_057786222.1`
3	Cytosol	细胞质基质	0.60000	`XP_057786222.1`
4	Cytoplasmic granule	细胞质颗粒	0.40000	`XP_057786222.1`
5	Cytoplasmic ribonucleoprotein granule	Cytoplasmic ribonucleoprotein granule	0.40000	`XP_057786222.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:62988103`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr1:62988121`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A4,C40,C85,D7
`Chr1:62988598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B46
`Chr1:62988744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr1:62988905`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A24

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057786222.1

358 aa

179

358

R3H

SUZ

PF01424 R3H 41-90 aa PF12752 SUZ 130-177 aa

XP_057786227.1

356 aa

178

356

R3H

SUZ

PF01424 R3H 41-90 aa PF12752 SUZ 130-177 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057786222.1`	Pfam	`PF01424`	R3H	Domain	41	90	1.8e-08	35.0	R3H domain
`XP_057786222.1`	Pfam	`PF12752`	SUZ	Domain	130	177	9.6e-12	46.2	SUZ domain
`XP_057786227.1`	Pfam	`PF01424`	R3H	Domain	41	90	1.9e-08	34.9	R3H domain
`XP_057786227.1`	Pfam	`PF12752`	SUZ	Domain	130	177	9.6e-12	46.2	SUZ domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057930244.1
AATATTCCCAACGAATGGCATTGGCTACTCTGCTTATACCCCACTCACTGTCCTTTTTTGGACTTTTCATTCTACTCCATCCAAAAAGGAAAAAATATACTGCTAAAATCTAAAATTATAAACGCAAGAAAAATATCAGAGAATAATGATAAAAAATTAAATAAAAATACATATAAATCCAAATCCTAATTCTGCTCAATCACTCTCTTCGACTGTGGAGGGATAATCCCAAGGAAAATTCGAGAAAGGGGCTTCCCTTT...

XM_057930239.1
CTCTGCTTATACCCCACTCACTGTCCTTTTTTGGACTTTTCATTCTACTCCATCCAAAAAGGAAAAAATATACTGCTAAAATCTAAAATTATAAACGCAAGAAAAATATCAGAGAATAATGATAAAAAATTAAATAAAAATACATATAAATCCAAATCCTAATTCTGCTCAATCACTCTCTTCGACTGTGGAGGGATAATCCCAAGGAAAATTCGAGAAAGGGGCTTCCCTTTTCTCAATTTCCCTCCCCTTCGCAAGGA...

CDS

2 records

下载 CDS FASTA

LOC131003690
ATGGATTCGACGCAGCAAGCCGTTTTGGAGCAGAAGGCGGAGGGGAATCAGCCGCCGCCGTACGTATCCATGGTGGATCCTTTTCTCGTCGAGGCGCTTCAGAATCCTCGCCATCGTCTGACTATTCTGCGGATGGAACTCGATGTACAGAAGTTCTTGCAGAATAATGATGTACTGCAGTTCGAGTTTCAGCACTTCCCAACTTCATACCTTCGTCTTGCCGCCCACCGTGTTGCTCAACACTATGGTTTGCAAACCAT...

Protein

2 records

下载 Protein FASTA

XP_057786222.1
MDSTQQAVLEQKAEGNQPPPYVSMVDPFLVEALQNPRHRLTILRMELDVQKFLQNNDVLQFEFQHFPTSYLRLAAHRVAQHYGLQTMVQDNVADGQGVRILVMKKPESKFPAVCLSDVPAKESENNKLDQMKIVIRPRPKASSNDLNEFGHKRNPVRTVEERKEEYDRARARIFSSPSNSGSEEALPWAASDGTNITVDDNEVSRDLGMDWEKRHCSMEGGNSSRVAIFRDREKDRTDPDYDRSYDRRRYVKSIPKAQSF...

XP_057786227.1
MDSTQQAVLEQKAEGNQPPPYVSMVDPFLVEALQNPRHRLTILRMELDVQKFLQNNDVLQFEFQHFPTSYLRLAAHRVAQHYGLQTMVQDNVADGQGVRILVMKKPESKFPAVCLSDVPAKESENNKLDQMKIVIRPRPKASSNDLNEFGHKRNPVRTVEERKEEYDRARARIFSSPSNSGSEEALPWAASDGTNITVDDNEVSRDLGMDWEKRHCSMEGGNSSRVAIFRDREKDRTDPDYDRSYDRYVKSIPKAQSFRM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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