Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004494`

染色体: Chr01 坐标: 63064819-63070667 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004494`
名称	SmilChr01G004494
描述	mediator of RNA polymerase II transcription subunit 15a-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63064819 - 63070667 / `+`

ID 对照

NCBI Gene ID	`LOC131003181`
GeneID	`131003181`
locus_tag	`-`
NCBI Name	`LOC131003181`
原始查询	`SmilChr01G004494`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述	mediator of RNA polymerase II transcription subunit 15a-like
产物	mediator of RNA polymerase II transcription subunit 15a-like
Arabidopsis	`AT1G15780` (NRB4) mediator of RNA polymerase II transcription subunit 15a-like protein [Source:NCBI gene (formerly Entrezgene);Acc:838147] identity=35.1; qcov=0.508; evalue=1.48e-45; confidence=medium
Rice	`Os08g0564800` (OsMED15_2) - identity=34.3; qcov=0.347; evalue=1.07e-32; confidence=low
GO	GO:0003713 (transcription coactivator activity); GO:0031490 (chromatin DNA binding)
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131003181

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057785647.1`
2	Chromosome	染色体	0.00000	`XP_057785647.1`
3	Centromere	着丝粒	0.00000	`XP_057785647.1`
4	Chromatin	染色质	0.00000	`XP_057785647.1`
5	Telomere	端粒	0.00000	`XP_057785647.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63066608`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:63066649`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B113,B33,D4
`Chr1:63066650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C87
`Chr1:63066651`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:63067555`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:63067562`	`T`	`TG`	1bp_insertion	frameshift_variant	14	A23,B101,B113,B124,B126,B21,B35,B49,B62,B66,B7,B76,B79,C62
`Chr1:63067591`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:63067643`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,B63,B73
`Chr1:63067727`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B125,B90,B92
`Chr1:63067838`	`CT`	`C`	1bp_deletion	frameshift_variant	1	B3
`Chr1:63067838`	`CT`	`C`	1bp_deletion	CDS_variant	1	B3
`Chr1:63067840`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B3

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057929664.1
ATTGGATTATAGGAATTAAAACGCATATTCCTGATTGATGTAACGCATCCGTTCTTTTGCAGCTTTTGATTTCCCATTTTTTATTTTGCCGCTTACATTACGATCTTCGATTGTTTTTTTCTTGGGTCGAACAATTCATTACTGTATTTATTTAGCTTTCGACGCAAGAAATTAAGAACAATTTTTTTGTGTGTTTCTATCGAAATTAGTTTAACACGATGGATGAAAGAATACCAAAATCAGATGAAATTGAAGAGTGG...

XM_057929670.1
GATTATAGGAATTAAAACGCATATTCCTGATTGATGTAACGCATCCGTTCTTTTGCAGCTTTTGATTTCCCATTTTTTATTTTGCCGCTTACATTACGATCTTCGATTGTTTTTTTCTTGGGTCGAACAATTCATTACTGTATTTATTTAGCTTTCGACGCAAGAAATTAAGAACAATTTTTTTGTGTGTTTCTATCGAAATTAGTTTAACACGATGGATGAAAGAATACCAAAATCAGATGAAATTGAAGAGTGGGTGA...

CDS

2 records

下载 CDS FASTA

LOC131003181
ATGGATGAAAGAATACCAAAATCAGATGAAATTGAAGAGTGGGTGAAAGAGCTCTGGCCCGATGGCCCAGCTGATATTGGCATGTGGCAGCATCCAGAACGCACTTCAGCTGAGAGACCAAATACTTGTCAACTGTCTGCGGATTCTCATGCTTATCCGAGAAATCCAAGTCAACATCAGCTAATGCAGCATACATCAACTGGATTCAATTCAACTCCCCTCATGGCAAAACGGGAGCAGGAGTCTTTGCAGAAGCTCTT...

Protein

2 records

下载 Protein FASTA

XP_057785647.1
MDERIPKSDEIEEWVKELWPDGPADIGMWQHPERTSAERPNTCQLSADSHAYPRNPSQHQLMQHTSTGFNSTPLMAKREQESLQKLLEPKNGMVIERAHPRLQMPSLHQPQNLTLADQLKPRNQTPLGPLQASESTSQVDMTNSIEWVNSAYHKIMQIKEMYLSQFLMLHHKMQELKRQATDAEMANKWEKNRRCIEGTIRFLNISKSDLLHMKRDNVCQMVGEAVRYASQFQLRNPLYSKQTHQVEASGNHIEAPQIQQ...

XP_057785653.1
MDERIPKSDEIEEWVKELWPDGPADIGMWQHPERTSAERPNTCQLSADSHAYPRNPSQHQLMQHTSTGFNSTPLMAKREQESLQKLLEPKNGMVIERAHPRLQMPSLHQPQNLTLADQLKPRNQTPLGPLQASESTSQVDMTNSIEWVNSAYHKIMQIKEMYLSQFLMLHHKMQELKRQATDAEMANKWEKNRRCIEGTIRFLNISKSDLLHMKRDNVCQMVGEAVRYASQFQLRNPLYSKQTHQVEASGNHIEAPQIQQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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