Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004503`

染色体: Chr01 坐标: 63129544-63133750 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004503`
名称	SmilChr01G004503
描述	uncharacterized SmilChr01G004503
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63129544 - 63133750 / `-`

ID 对照

NCBI Gene ID	`LOC131003319`
GeneID	`131003319`
locus_tag	`-`
NCBI Name	`LOC131003319`
原始查询	`SmilChr01G004503`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:824826]; symbol=AT3G56590; hit=AT3G56590; species=arabidopsis; confidence=medium
产物	hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:824826]; symbol=AT3G56590; hit=AT3G56590; species=arabidopsis; confidence=medium
Arabidopsis	`AT3G56590` (AT3G56590) hydroxyproline-rich glycoprotein family protein [Source:NCBI gene (formerly Entrezgene);Acc:824826] identity=55.9; qcov=0.511; evalue=4.05e-79; confidence=medium
Rice	`Os05g0373500` - identity=51.4; qcov=0.539; evalue=8.45e-69; confidence=medium
GO	-
KEGG	-
Pfam	PF23041 (DUF7036)
InterPro	-
eggNOG	-
NR	GeneID:131003319

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057785821.1`
2	Nucleus	细胞核	0.00000	`XP_057785821.1`
3	Chromosome	染色体	0.00000	`XP_057785821.1`
4	Centromere	着丝粒	0.00000	`XP_057785821.1`
5	Chromatin	染色质	0.00000	`XP_057785821.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63129974`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:63130248`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B105,B26,B63,B73,B75
`Chr1:63130319`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B26,C40,C61
`Chr1:63130399`	`GC`	`G`	1bp_deletion	frameshift_variant	1	A21
`Chr1:63130399`	`GC`	`G`	1bp_deletion	CDS_variant	1	A21
`Chr1:63130401`	`ATT`	`A`	2bp_deletion	frameshift_variant	1	A21
`Chr1:63130401`	`ATT`	`A`	2bp_deletion	CDS_variant	1	A21
`Chr1:63130434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:63130620`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B2,C82
`Chr1:63130699`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:63130950`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B46,B77,D11
`Chr1:63131244`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785821.1

503 aa

252

503

DUF7036

PF23041 DUF7036 86-170 aa PF23041 DUF7036 203-294 aa

XP_057785829.1

500 aa

250

500

DUF7036

PF23041 DUF7036 86-170 aa PF23041 DUF7036 203-294 aa

XP_057785835.1

466 aa

233

466

DUF7036

PF23041 DUF7036 49-133 aa PF23041 DUF7036 166-257 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785821.1`	Pfam	`PF23041`	DUF7036	Domain	86	170	9.1e-46	155.1	Domain of unknown function (DUF7036)
`XP_057785821.1`	Pfam	`PF23041`	DUF7036	Domain	203	294	9.1e-46	155.1	Domain of unknown function (DUF7036)
`XP_057785829.1`	Pfam	`PF23041`	DUF7036	Domain	86	170	9.2e-46	155.1	Domain of unknown function (DUF7036)
`XP_057785829.1`	Pfam	`PF23041`	DUF7036	Domain	203	294	9.2e-46	155.1	Domain of unknown function (DUF7036)
`XP_057785835.1`	Pfam	`PF23041`	DUF7036	Domain	49	133	7e-46	155.5	Domain of unknown function (DUF7036)
`XP_057785835.1`	Pfam	`PF23041`	DUF7036	Domain	166	257	7e-46	155.5	Domain of unknown function (DUF7036)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057929838.1
TGATCTAATGAAGTTACTGCACGATCTTCCATCTCCCAACAATGAAACCGTTGAATAAAAAAAAAGCCAATTTTCCTCCACCCCTTAACCACTCACCAAAAAATCCCCTCTCTCTCTCTAACCTCAGAGAGAGTACAAGAAAAGGAAGGAGGAAAAAAAGGGAGGTAGCTACGAACTCTCTTTCACCAAACACACACCAGTAATGGAGTCTATCAGAAAAACCCTCGAAGAAGAAAACCCGCATTGCTGAAATTACTGCA...

XM_057929846.1
ATTTTCCTCCACCCCTTAACCACTCACCAAAAAATCCCCTCTCTCTCTCTAACCTCAGAGAGAGTACAAGAAAAGGAAGGAGGAAAAAAAGGGAGGTAGCTACGAACTCTCTTTCACCAAACACACACCAGTAATGGAGTCTATCAGAAAAACCCTCGAAGAAGAAAACCCGCATTGCTGAAATTACTGCAATGGGTAAGGCGGAGGACGAGCAGTCTCAGCCGAGTACACCACTTGATGCTCGGGGTACAACCCCAGCT...

CDS

3 records

下载 CDS FASTA

LOC131003319
ATGGGTAAGGCGGAGGACGAGCAGTCTCAGCCGAGTACACCACTTGATGCTCGGGGTACAACCCCAGCTGCAGGGAGCAGCAATGGCTGCTGCTTAGGCTGCACTAGGCTGCGGAAGTCGGTGACCTTTAGATGCGTCTTTGTTTTGTTGCTCGGCGTAGCAGTGTTGCTGTCGGCCGTTTTTTGGCTGCCATTTTTTCGGTTCAGAGATCGTCAAGATCCGGATCTGGATTATGCAGGTTACGATATAGTGGCGAGTTT...

Protein

3 records

下载 Protein FASTA

XP_057785821.1
MGKAEDEQSQPSTPLDARGTTPAAGSSNGCCLGCTRLRKSVTFRCVFVLLLGVAVLLSAVFWLPFFRFRDRQDPDLDYAGYDIVASFMLSKPASFLQDHVLRLEGDIFDEMSFPSVKVEIISAKPSAEPNRTRVVFAVESDLTSQSLIRDSFMYLISRQSVLHLTASLFGDPFSFEVLKFRGGITASPEQKAFLMQSGQILFNFTLNFCIDQILNNFDELRSQLRMGLDLAPYENLYISLTNFKGSTIDPPTTVESKVLL...

XP_057785829.1
MGKAEDEQSQPSTPLDARGTTPAAGSSNGCCLGCTRLRKSVTFRCVFVLLLGVAVLLSAVFWLPFFRFRDRQDPDLDYAGYDIVASFMLSKPASFLQDHVLRLEGDIFDEMSFPSVKVEIISAKPSAEPNRTRVVFAVESDLTSQSLIRDSFMYLISRQSVLHLTASLFGDPFSFEVLKFRGGITASPEQKAFLMQSGQILFNFTLNFCIDQILNNFDELRSQLRMGLDLAPYENLYISLTNFKGSTIDPPTTVESKVLL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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