当前解析结果
SmilChr01G004508| 统一新 Gene ID | SmilChr01G004508 |
|---|---|
| 名称 | SmilChr01G004508 |
| 描述 | putative disease resistance protein RGA3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63172594 - 63175749 / - |
| NCBI Gene ID | LOC131003174 |
|---|---|
| GeneID | 131003174 |
| locus_tag | - |
| NCBI Name | LOC131003174 |
| 原始查询 | SmilChr01G004508 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative disease resistance protein RGA3 |
| 产物 | putative disease resistance protein RGA3 |
| Arabidopsis | AT3G14470 (AT3G14470)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820670] identity=34.2; qcov=0.927; evalue=7.05e-141; confidence=low |
| Rice | Os05g0492200 (YR1)- identity=36.2; qcov=1.03; evalue=2.64e-163; confidence=medium |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131003174 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057785640.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057785640.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057785640.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057785640.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057785640.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63173019 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B139,C14 |
Chr1:63173052 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B64,B81,C12,C38 |
Chr1:63173209 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr1:63173260 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr1:63173661 |
A |
AGG |
2bp_insertion | frameshift_variant | 2 | B101,C79 |
Chr1:63173661 |
A |
AGG |
2bp_insertion | CDS_variant | 2 | B101,C79 |
Chr1:63173894 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B63 |
Chr1:63173986 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:63174108 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B65 |
Chr1:63174469 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr1:63174620 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,C10 |
Chr1:63174678 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057785640.1PF18052
Rx_N 15-101 aa
PF00931
NB-ARC 188-345 aa
PF23559
WHD_DRP 430-500 aa
PF23598
LRR_14 570-854 aa
PF25019
LRR_R13L1-DRL21 685-807 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057785640.1 |
Pfam | PF18052 |
Rx_N | Domain | 15 | 101 | 6e-13 | 49.4 | Rx N-terminal domain |
XP_057785640.1 |
Pfam | PF00931 |
NB-ARC | Domain | 188 | 345 | 6.8e-33 | 114.4 | NB-ARC domain |
XP_057785640.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 430 | 500 | 7.5e-22 | 77.9 | Disease resistance protein Winged helix domain |
XP_057785640.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 570 | 854 | 1.7e-23 | 83.7 | Leucine-rich repeat region |
XP_057785640.1 |
Pfam | PF25019 |
LRR_R13L1-DRL21 | Repeat | 685 | 807 | 1.6e-41 | 141.9 | R13L1/DRL21 LRRs |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。