Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004510`

染色体: Chr01 坐标: 63184665-63189412 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004510`
名称	SmilChr01G004510
描述	uncharacterized SmilChr01G004510
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63184665 - 63189412 / `-`

ID 对照

NCBI Gene ID	`LOC131003138`
GeneID	`131003138`
locus_tag	`-`
NCBI Name	`LOC131003138`
原始查询	`SmilChr01G004510`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	YR1; symbol=YR1; hit=Os05g0492200; species=rice; confidence=low
产物	YR1; symbol=YR1; hit=Os05g0492200; species=rice; confidence=low
Arabidopsis	`AT3G14460` (AT3G14460) LRR and NB-ARC domains-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:820669] identity=33; qcov=0.436; evalue=3.55e-58; confidence=low
Rice	`Os05g0492200` (YR1) - identity=33.6; qcov=0.485; evalue=1.17e-69; confidence=low
GO	GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF23559 (WHD_DRP); PF23598 (LRR_14); PF25019 (LRR_R13L1-DRL21)
InterPro	-
eggNOG	-
NR	GeneID:131003138

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.60000	`XP_057785603.1`
2	Nucleus	细胞核	0.60000	`XP_057785611.1`
3	Cytoplasm	细胞质	0.20000	`XP_057785603.1`
4	Cytosol	细胞质基质	0.20000	`XP_057785603.1`
5	Chromosome	染色体	0.00000	`XP_057785603.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63184893`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63184903`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63184938`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63184958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63185002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B26,C40,C61
`Chr1:63185012`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63185047`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63185048`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63185055`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B12,B65,C83,D10
`Chr1:63185095`	`A`	`AG`	1bp_insertion	frameshift_variant	2	B26,B73
`Chr1:63185095`	`A`	`AG`	1bp_insertion	CDS_variant	2	B26,B73
`Chr1:63185097`	`TA`	`T`	1bp_deletion	frameshift_variant	2	B26,B73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785603.1

1101 aa

550

1101

Pkinase

PK_Tyr_Ser-Thr

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF00069 Pkinase 261-380 aa PF07714 PK_Tyr_Ser-Thr 262-379 aa PF23559 WHD_DRP 588-635 aa PF23598 LRR_14 728-1042 aa PF25019 LRR_R13L1-DRL21 842-964 aa

XP_057785611.1

1091 aa

546

1091

Pkinase

PK_Tyr_Ser-Thr

WHD_DRP

LRR_14

LRR_R13L1-DRL21

PF00069 Pkinase 261-380 aa PF07714 PK_Tyr_Ser-Thr 262-379 aa PF23559 WHD_DRP 578-625 aa PF23598 LRR_14 718-1032 aa PF25019 LRR_R13L1-DRL21 832-954 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785603.1`	Pfam	`PF00069`	Pkinase	Domain	261	380	1.1e-32	114.2	Protein kinase domain
`XP_057785603.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	262	379	1.7e-11	44.7	Protein tyrosine and serine/threonine kinase
`XP_057785603.1`	Pfam	`PF23559`	WHD_DRP	Domain	588	635	9.9e-11	42.2	Disease resistance protein Winged helix domain
`XP_057785603.1`	Pfam	`PF23598`	LRR_14	Repeat	728	1042	7.2e-30	104.6	Leucine-rich repeat region
`XP_057785603.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	842	964	1.4e-47	161.5	R13L1/DRL21 LRRs
`XP_057785611.1`	Pfam	`PF00069`	Pkinase	Domain	261	380	1.1e-32	114.2	Protein kinase domain
`XP_057785611.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	262	379	1.6e-11	44.7	Protein tyrosine and serine/threonine kinase
`XP_057785611.1`	Pfam	`PF23559`	WHD_DRP	Domain	578	625	9.8e-11	42.3	Disease resistance protein Winged helix domain
`XP_057785611.1`	Pfam	`PF23598`	LRR_14	Repeat	718	1032	2.7e-28	99.5	Leucine-rich repeat region
`XP_057785611.1`	Pfam	`PF25019`	LRR_R13L1-DRL21	Repeat	832	954	1.6e-47	161.3	R13L1/DRL21 LRRs

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057929628.1
CATAATTGAGAATTAAGAAATGAGCCCATTGGGGGAGGGAGTAGAAGGAAAGGACAAAAGCAAGTCTTCTTAGCAAAGCCGAAACCAGTGAAGAATTGAGAATTGAAGGTGAAGATTAGCTGCTGCTCTGCAAATGGAAGCCTACCGAATCACGCTGCCGCATATGGCCAAATCGAGATGGAGGAAACTTGCACTCATAATAGCCGCAATCCAGGCTATGAGGGAAAATTCATCTGCAAAGAAATCAATCTCAGCGCCTG...

XM_057929620.1
CATAATTGAGAATTAAGAAATGAGCCCATTGGGGGAGGGAGTAGAAGGAAAGGACAAAAGCAAGTCTTCTTAGCAAAGCCGAAACCAGTGAAGAATTGAGAATTGAAGGTGAAGATTAGCTGCTGCTCTGCAAATGGAAGCCTACCGAATCACGCTGCCGCATATGGCCAAATCGAGATGGAGGAAACTTGCACTCATAATAGCCGCAATCCAGGCTATGAGGGAAAATTCATCTGCAAAGAAATCAATCTCAGCGCCTG...

CDS

2 records

下载 CDS FASTA

LOC131003138
ATGGAAGCCTACCGAATCACGCTGCCGCATATGGCCAAATCGAGATGGAGGAAACTTGCACTCATAATAGCCGCAATCCAGGCTATGAGGGAAAATTCATCTGCAAAGAAATCAATCTCAGCGCCTGCGTCATCTTCTCTGAAATCAAGAGGAAACCCAACAGCTATTCTATCAGATTATTTTTTGGGGGTTAACCCTAATTCTTCGTTTTCACCGTCGATGATGCCACTGAAATCAAGGTGGAGAATACTGAAGCACGT...

Protein

2 records

下载 Protein FASTA

XP_057785603.1
MEAYRITLPHMAKSRWRKLALIIAAIQAMRENSSAKKSISAPASSSLKSRGNPTAILSDYFLGVNPNSSFSPSMMPLKSRWRILKHVIVATLRFQAALGRHLDSELSSSSSTFLSLETDEAYSLHEASASGVSQGNSPFSFDDLFQFPSPSPIDDLVQSPAWMTQERDPPFGFSPSLSRWRVLKHVVVATLRLQSIGRGGRRSPSRWMKTSDATVRLGRDRSPPSRWINKMNAHTLLQVVTSFPNLPDFDLKSIIQTDDI...

XP_057785611.1
MEAYRITLPHMAKSRWRKLALIIAAIQAMRENSSAKKSISAPASSSLKSRGNPTAILSDYFLGVNPNSSFSPSMMPLKSRWRILKHVIVATLRFQAALGRHLDSELSSSSSTFLSLETDEAYSLHEASASGVSQGNSPFSFDDLFQFPSPSPIDDLVQSPAWMTQERDPPFGFSPSLSRWRVLKHVVVATLRLQSIGRGGRRSPSRWMKTSDATVRLGRDRSPPSRWINKMNAHTLLQVVTSFPNLPDFDLKSIIQTDDI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器