Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004511`

染色体: Chr01 坐标: 63191562-63195966 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004511`
名称	SmilChr01G004511
描述	putative methyltransferase At1g22800, mitochondrial
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63191562 - 63195966 / `-`

ID 对照

NCBI Gene ID	`LOC131003738`
GeneID	`131003738`
locus_tag	`-`
NCBI Name	`LOC131003738`
原始查询	`SmilChr01G004511`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative methyltransferase At1g22800, mitochondrial
产物	putative methyltransferase At1g22800%2C mitochondrial
Arabidopsis	`AT1G22800` (AT1G22800) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838886] identity=74.9; qcov=0.925; evalue=1.27e-175; confidence=high
Rice	`Os12g0203100` - identity=67.9; qcov=0.413; evalue=1.21e-62; confidence=low
GO	GO:0005739 (mitochondrion); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity); GO:0032981 (mitochondrial respiratory chain complex I assembly)
KEGG	-
Pfam	PF08241 (Methyltransf_11); PF13649 (Methyltransf_25)
InterPro	-
eggNOG	-
NR	GeneID:131003738

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057786270.1`
2	Mitochondrion matrix	线粒体基质	1.00000	`XP_057786270.1`
3	Nucleus	细胞核	0.00000	`XP_057786270.1`
4	Chromosome	染色体	0.00000	`XP_057786270.1`
5	Centromere	着丝粒	0.00000	`XP_057786270.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63191917`	`T`	`TA`	1bp_insertion	frameshift_variant	1	D11
`Chr1:63191917`	`T`	`TA`	1bp_insertion	CDS_variant	1	D11
`Chr1:63191960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63191964`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B110,B132,C46,D6
`Chr1:63191991`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63192432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63193366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B55,B60,C23,C48
`Chr1:63193372`	`GTT`	`G`	2bp_deletion	frameshift_variant	63	A1,A15,A19,A23,A24,A5,B10,B101,B102,B104,B11,B111,B113,B118,B123,B126,B129,B13,B134,B15,B18,B19,B24,B28,B30,B35,B37,B40,B42,B43,B59,B63,B73,B74,B77,B8,B83,B89,B91,B93,C10,C14,C18,C19,C21,C25,C26,C3,C30,C35,C36,C41,C44,C46,C47,C7,C72,C73,C74,C75,C78,D1,D8
`Chr1:63193373`	`TTA`	`T`	2bp_deletion	frameshift_variant	208	A1,A10,A11,A14,A15,A16,A18,A2,A20,A21,A22,A23,A24,A25,A3,A4,A5,A6,A8,A9,B1,B100,B101,B103,B104,B105,B106,B107,B108,B109,B111,B112,B114,B115,B117,B118,B119,B12,B120,B121,B122,B123,B124,B125,B127,B128,B129,B130,B131,B132,B133,B135,B136,B137,B138,B14,B140,B16,B17,B18,B2,B20,B21,B22,B23,B25,B26,B27,B28,B29,B31,B32,B33,B35,B38,B39,B4,B40,B41,B42,B43,B44,B45,B46,B47,B48,B49,B5,B50,B51,B52,B53,B54,B55,B56,B57,B6,B60,B61,B62,B64,B65,B66,B67,B68,B69,B70,B71,B72,B75,B76,B78,B79,B8,B80,B81,B82,B84,B85,B86,B87,B88,B9,B90,B91,B92,B94,B95,B96,B97,B98,B99,C1,C11,C12,C13,C15,C16,C17,C18,C2,C20,C22,C23,C24,C27,C28,C29,C3,C31,C33,C34,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C48,C49,C50,C52,C53,C54,C56,C57,C58,C59,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C70,C71,C73,C74,C75,C76,C77,C79,C8,C80,C81,C83,C84,C85,C86,C87,C9,D10,D11,D2,D3,D4,D5,D6,D7,D9
`Chr1:63194094`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B26,B73
`Chr1:63194264`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B12,B65
`Chr1:63194443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B26,B73

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057786270.1

332 aa

166

332

Methyltransf_11

Methyltransf_25

PF08241 Methyltransf_11 87-178 aa PF13649 Methyltransf_25 93-175 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057786270.1`	Pfam	`PF08241`	Methyltransf_11	Domain	87	178	3.6e-10	41.0	Methyltransferase domain
`XP_057786270.1`	Pfam	`PF13649`	Methyltransf_25	Domain	93	175	8.4e-07	30.3	Methyltransferase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057930287.1
GCAAGCACAAAGCCTGTAAAATTCCCCAAGTAAAAAAAAAGGCCTGTAATATTGAGCCCAATTCATCCTTTGCTATTGGAAAGTCCGACGGAAAAACCGAACCGGGAAAACATCAATCTCCAGAACTCGCAGACCCACCGACAGCAATTGGTTTTCCGGCGAATTCGAAAAATGAGAGCTGCCGTCGATCTTTACCGGAAGAGTTTAAGCCGCACTCTATGGAGGAATGGGAGATTCTACTGTACGGACCAGAGCTCCAG...

CDS

1 records

下载 CDS FASTA

LOC131003738
ATGAGAGCTGCCGTCGATCTTTACCGGAAGAGTTTAAGCCGCACTCTATGGAGGAATGGGAGATTCTACTGTACGGACCAGAGCTCCAGAGTTAAAATTTTTGACCGCAATCTCAAGCGCAAACAACGAGATAGAGCCGCGTGGATATTGCGCCCCGGGGATTCTTTGGTGGATGCAGTAGCTGAGAATTTGCTGGATCGGTTGGAGGACTGTAAAAAGACATTTCCTTCAGCGTTATGCATGGGGGGTTCTTTGGAAGC...

Protein

1 records

下载 Protein FASTA

XP_057786270.1
MRAAVDLYRKSLSRTLWRNGRFYCTDQSSRVKIFDRNLKRKQRDRAAWILRPGDSLVDAVAENLLDRLEDCKKTFPSALCMGGSLEAIRRLLNGRGGIKKLLMMDASVDMVKLCEQAEINSPNKNVETSFVVADEEFLPVKESSLDLVISCLGLHWTNDLPGAMIQSRLALKPDGLFLGAILGGETLRELRIACTVAQMEREGGISPRLSPLAQVRDAGNLLTRAGFTLPGVDVDEYTVRYNSALELIEHLRSMGETNAL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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