当前解析结果
SmilChr01G004516| 统一新 Gene ID | SmilChr01G004516 |
|---|---|
| 名称 | SmilChr01G004516 |
| 描述 | alpha-L-arabinofuranosidase 1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63281065 - 63287774 / - |
| NCBI Gene ID | LOC131004065 |
|---|---|
| GeneID | 131004065 |
| locus_tag | - |
| NCBI Name | LOC131004065 |
| 原始查询 | SmilChr01G004516 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | alpha-L-arabinofuranosidase 1-like |
| 产物 | alpha-L-arabinofuranosidase 1-like |
| Arabidopsis | AT3G10740 (ASD1)alpha-L-arabinofuranosidase 1 [Source:NCBI gene (formerly Entrezgene);Acc:820243] identity=67.6; qcov=0.985; evalue=0; confidence=high |
| Rice | Os12g0128700- identity=66.7; qcov=0.943; evalue=0; confidence=high |
| GO | GO:0046373 (L-arabinose metabolic process); GO:0046556 (alpha-L-arabinofuranosidase activity) |
| KEGG | smil00520 (Amino sugar and nucleotide sugar metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF06964 (Alpha-L-AF_C); PF22848 (ASD1_dom) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004065 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 0.60000 | XP_057786636.1 |
| 2 | Vacuole | 液泡 | 0.60000 | XP_057786636.1 |
| 3 | Cell wall | 细胞壁 | 0.40000 | XP_057786636.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057786636.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057786636.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63281255 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B25,B74,D7 |
Chr1:63281276 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr1:63282012 |
AC |
A |
1bp_deletion | frameshift_variant | 127 | A1,A11,A18,A2,A20,A21,A23,A24,A3,A4,A5,A6,A7,A8,A9,B10,B101,B104,B105,B11,B110,B111,B117,B119,B123,B128,B129,B13,B130,B132,B133,B138,B14,B140,B17,B18,B19,B2,B20,B23,B24,B3,B30,B35,B36,B37,B38,B39,B40,B41,B42,B43,B45,B49,B5,B52,B55,B57,B59,B61,B62,B64,B66,B68,B7,B70,B72,B75,B77,B79,B8,B81,B82,B84,B85,B86,B87,B89,B9,B91,B93,B94,B95,B97,B98,C1,C16,C2,C22,C25,C28,C3,C31,C32,C33,C34,C37,C39,C4,C40,C42,C45,C46,C49,C5,C53,C54,C57,C58,C60,C63,C65,C67,C68,C7,C71,C72,C74,C8,C80,C83,C85,C87,C9,D10,D6,D7 |
Chr1:63282188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B26,B66,C40,C61 |
Chr1:63282295 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B109 |
Chr1:63282410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C27 |
Chr1:63282420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:63284163 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr1:63285171 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B58 |
Chr1:63285171 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B58 |
Chr1:63285206 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,B2,B24,B65,C82 |
Chr1:63285602 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B26,B66 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057786636.1PF22848
ASD1_dom 248-449 aa
PF06964
Alpha-L-AF_C 468-644 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057786636.1 |
Pfam | PF22848 |
ASD1_dom | Domain | 248 | 449 | 1.2e-54 | 185.9 | Alpha-L-arabinofuranosidase 1 domain |
XP_057786636.1 |
Pfam | PF06964 |
Alpha-L-AF_C | Domain | 468 | 644 | 1.7e-27 | 97.4 | Alpha-L-arabinofuranosidase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。