当前解析结果
SmilChr01G004535| 统一新 Gene ID | SmilChr01G004535 |
|---|---|
| 名称 | SmilChr01G004535 |
| 描述 | protein DETOXIFICATION 21-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63516940 - 63520314 / + |
| NCBI Gene ID | LOC131003392 |
|---|---|
| GeneID | 131003392 |
| locus_tag | - |
| NCBI Name | LOC131003392 |
| 原始查询 | SmilChr01G004535 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein DETOXIFICATION 21-like |
| 产物 | protein DETOXIFICATION 21-like |
| Arabidopsis | AT1G33110 (AT1G33110)MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:840207] identity=65.5; qcov=0.967; evalue=0; confidence=high |
| Rice | Os12g0126000- identity=62.8; qcov=1; evalue=0; confidence=high |
| GO | GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane) |
| KEGG | - |
| Pfam | PF01554 (MatE) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131003392 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 0.80000 | XP_057785904.1 |
| 2 | Vacuole membrane | 液泡膜 | 0.80000 | XP_057785904.1 |
| 3 | Cell membrane | 细胞膜 | 0.20000 | XP_057785904.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057785904.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057785904.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63517390 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B12,B65,D11 |
Chr1:63517426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B12,B65 |
Chr1:63517448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B12 |
Chr1:63518424 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B74,C87 |
Chr1:63518525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B128,B61 |
Chr1:63518526 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C17 |
Chr1:63518879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C83,D11 |
Chr1:63518941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A13 |
Chr1:63519427 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B101,B91,C26,C57 |
Chr1:63520044 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B26,C40,C61 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057785904.1PF01554
MatE 39-199 aa
PF01554
MatE 262-421 aa
XP_057785905.1PF01554
MatE 39-199 aa
PF01554
MatE 262-421 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057785904.1 |
Pfam | PF01554 |
MatE | Family | 39 | 199 | 1.7e-57 | 194.3 | MatE |
XP_057785904.1 |
Pfam | PF01554 |
MatE | Family | 262 | 421 | 1.7e-57 | 194.3 | MatE |
XP_057785905.1 |
Pfam | PF01554 |
MatE | Family | 39 | 199 | 1.7e-57 | 194.3 | MatE |
XP_057785905.1 |
Pfam | PF01554 |
MatE | Family | 262 | 421 | 1.7e-57 | 194.3 | MatE |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。