当前解析结果
SmilChr01G004540| 统一新 Gene ID | SmilChr01G004540 |
|---|---|
| 名称 | SmilChr01G004540 |
| 描述 | uncharacterized SmilChr01G004540 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63546537 - 63551510 / + |
| NCBI Gene ID | LOC131011394 |
|---|---|
| GeneID | 131011394 |
| locus_tag | - |
| NCBI Name | LOC131011394 |
| 原始查询 | SmilChr01G004540 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os04g0191000; species=rice; confidence=low |
| 产物 | hit=Os04g0191000; species=rice; confidence=low |
| Arabidopsis | -- |
| Rice | Os04g0191000- identity=27.4; qcov=0.667; evalue=1.92e-09; confidence=low |
| GO | GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding) |
| KEGG | - |
| Pfam | PF00098 (zf-CCHC); PF08284 (RVP_2); PF13650 (Asp_protease_2); PF13975 (gag-asp_proteas); PF30863 (PRO_PEG10-RTL1) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011394 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057795189.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057795189.1 |
| 3 | Nucleus | 细胞核 | 0.60000 | XP_057795189.1 |
| 4 | Cytoplasmic granule | 细胞质颗粒 | 0.20000 | XP_057795189.1 |
| 5 | Cytoplasmic ribonucleoprotein granule | Cytoplasmic ribonucleoprotein granule | 0.20000 | XP_057795189.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63546540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B122,C3,C50 |
Chr1:63546567 |
C |
T |
EMS_canonical_SNV | stop_gained | 7 | B128,B34,C1,C13,C30,C40,D6 |
Chr1:63546594 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr1:63546618 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A23,B70 |
Chr1:63546627 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,C48 |
Chr1:63546650 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B113,B54,B86,C57 |
Chr1:63546677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B133,C24 |
Chr1:63546698 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B117,B9,C14 |
Chr1:63546709 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B2 |
Chr1:63546835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A14 |
Chr1:63546922 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B82 |
Chr1:63546948 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795189.1PF00098
zf-CCHC 23-39 aa
PF13975
gag-asp_proteas 55-140 aa
PF13650
Asp_protease_2 58-137 aa
PF08284
RVP_2 58-157 aa
PF30863
PRO_PEG10-RTL1 58-157 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795189.1 |
Pfam | PF00098 |
zf-CCHC | Domain | 23 | 39 | 1.3e-05 | 25.8 | Zinc knuckle |
XP_057795189.1 |
Pfam | PF13975 |
gag-asp_proteas | Domain | 55 | 140 | 6.8e-09 | 36.9 | gag-polyprotein putative aspartyl protease |
XP_057795189.1 |
Pfam | PF13650 |
Asp_protease_2 | Domain | 58 | 137 | 2.6e-07 | 31.9 | Aspartyl protease |
XP_057795189.1 |
Pfam | PF08284 |
RVP_2 | Domain | 58 | 157 | 4.5e-24 | 85.5 | Retroviral aspartyl protease |
XP_057795189.1 |
Pfam | PF30863 |
PRO_PEG10-RTL1 | Domain | 58 | 157 | 1.7e-12 | 48.4 | PEG10/RTL1 protease domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。