当前解析结果
SmilChr01G004543| 统一新 Gene ID | SmilChr01G004543 |
|---|---|
| 名称 | SmilChr01G004543 |
| 描述 | phosphatidylinositol N-acetylglucosaminyltransferase subunit A |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63575950 - 63580746 / + |
| NCBI Gene ID | LOC131003481 |
|---|---|
| GeneID | 131003481 |
| locus_tag | - |
| NCBI Name | LOC131003481 |
| 原始查询 | SmilChr01G004543 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | phosphatidylinositol N-acetylglucosaminyltransferase subunit A |
| 产物 | phosphatidylinositol N-acetylglucosaminyltransferase subunit A |
| Arabidopsis | AT3G45100 (SETH2)UDP-Glycosyltransferase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:823646] identity=83.5; qcov=0.978; evalue=0; confidence=high |
| Rice | Os07g0270950- identity=81.8; qcov=0.949; evalue=0; confidence=high |
| GO | GO:0000506 (glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex); GO:0006506 (GPI anchor biosynthetic process); GO:0017176 (phosphatidylinositol N-acetylglucosaminyltransferase activity) |
| KEGG | smil00563 (Glycosylphosphatidylinositol (GPI)-anchor biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00534 (Glycos_transf_1); PF08288 (PIGA); PF13439 (Glyco_transf_4); PF13579 (Glyco_trans_4_4); PF13692 (Glyco_trans_1_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131003481 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057785950.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057785950.1 |
| 3 | Vesicle | 囊泡 | 0.20000 | XP_057785950.1 |
| 4 | Lipid droplet | 脂滴 | 0.20000 | XP_057785950.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057785950.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63578191 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B31,B47,D1 |
Chr1:63578197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A13,B1 |
Chr1:63578245 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr1:63579707 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B90,B92 |
Chr1:63580122 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A21,C25 |
Chr1:63580304 |
A |
AG |
1bp_insertion | frameshift_variant | 2 | B51,C36 |
Chr1:63580304 |
A |
AG |
1bp_insertion | CDS_variant | 2 | B51,C36 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057785950.1PF13439
Glyco_transf_4 20-187 aa
PF13579
Glyco_trans_4_4 21-182 aa
PF08288
PIGA 46-135 aa
PF00534
Glycos_transf_1 197-340 aa
PF13692
Glyco_trans_1_4 202-338 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057785950.1 |
Pfam | PF13439 |
Glyco_transf_4 | Domain | 20 | 187 | 4.3e-29 | 102.4 | Glycosyltransferase Family 4 |
XP_057785950.1 |
Pfam | PF13579 |
Glyco_trans_4_4 | Domain | 21 | 182 | 1.9e-13 | 51.8 | Glycosyl transferase 4-like domain |
XP_057785950.1 |
Pfam | PF08288 |
PIGA | Family | 46 | 135 | 6.8e-43 | 146.0 | PIGA (GPI anchor biosynthesis) |
XP_057785950.1 |
Pfam | PF00534 |
Glycos_transf_1 | Domain | 197 | 340 | 3.3e-29 | 102.3 | Glycosyl transferases group 1 |
XP_057785950.1 |
Pfam | PF13692 |
Glyco_trans_1_4 | Domain | 202 | 338 | 1.9e-25 | 90.5 | Glycosyl transferases group 1 |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。