Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004546`

染色体: Chr01 坐标: 63599657-63602035 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004546`
名称	SmilChr01G004546
描述	protein DETOXIFICATION 24-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63599657 - 63602035 / `+`

ID 对照

NCBI Gene ID	`LOC131003413`
GeneID	`131003413`
locus_tag	`-`
NCBI Name	`LOC131003413`
原始查询	`SmilChr01G004546`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 24-like
产物	protein DETOXIFICATION 24-like
Arabidopsis	`AT5G17700` (AT5G17700) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:831637] identity=52; qcov=0.888; evalue=3.37e-130; confidence=high
Rice	`Os11g0126100` - identity=47.9; qcov=0.91; evalue=3.42e-117; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131003413

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057785906.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057785906.1`
3	Cell membrane	细胞膜	0.20000	`XP_057785906.1`
4	Nucleus	细胞核	0.00000	`XP_057785906.1`
5	Chromosome	染色体	0.00000	`XP_057785906.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63599947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:63600009`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A10,B98
`Chr1:63600092`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:63600136`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B109
`Chr1:63600275`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A24,B5,C40
`Chr1:63600372`	`C`	`CT`	1bp_insertion	frameshift_variant	60	A1,A10,A14,A18,B106,B107,B108,B11,B110,B113,B115,B120,B121,B122,B137,B138,B139,B140,B18,B19,B21,B29,B30,B33,B34,B4,B46,B51,B56,B58,B59,B66,B69,B70,B71,B74,B77,B96,C10,C13,C17,C19,C21,C23,C24,C29,C32,C35,C36,C41,C45,C52,C68,C70,C8,C84,D2,D4,D6,D8
`Chr1:63600422`	`GC`	`G`	1bp_deletion	frameshift_variant	1	B90
`Chr1:63600422`	`GC`	`G`	1bp_deletion	CDS_variant	1	B90
`Chr1:63600634`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C1
`Chr1:63600634`	`CG`	`C`	1bp_deletion	CDS_variant	1	C1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057785906.1

483 aa

242

483

MatE

PF01554 MatE 47-207 aa PF01554 MatE 270-429 aa

XP_057785907.1

477 aa

238

477

MatE

PF01554 MatE 47-207 aa PF01554 MatE 270-428 aa

XP_057785908.1

454 aa

227

454

MatE

PF01554 MatE 47-207 aa PF01554 MatE 270-429 aa

XP_057785909.1

448 aa

224

448

MatE

PF01554 MatE 47-207 aa PF01554 MatE 270-428 aa

XP_057785911.1

421 aa

210

421

MatE

PF01554 MatE 47-207 aa PF01554 MatE 270-365 aa

XP_057785917.1

417 aa

208

417

MatE

PF01554 MatE 47-207 aa PF01554 MatE 270-365 aa

XP_057785929.1

411 aa

206

411

MatE

PF01554 MatE 47-207 aa PF01554 MatE 270-373 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057785906.1`	Pfam	`PF01554`	MatE	Family	47	207	4.6e-42	144.2	MatE
`XP_057785906.1`	Pfam	`PF01554`	MatE	Family	270	429	4.6e-42	144.2	MatE
`XP_057785907.1`	Pfam	`PF01554`	MatE	Family	47	207	6.4e-38	130.7	MatE
`XP_057785907.1`	Pfam	`PF01554`	MatE	Family	270	428	6.4e-38	130.7	MatE
`XP_057785908.1`	Pfam	`PF01554`	MatE	Family	47	207	3.8e-42	144.4	MatE
`XP_057785908.1`	Pfam	`PF01554`	MatE	Family	270	429	3.8e-42	144.4	MatE
`XP_057785909.1`	Pfam	`PF01554`	MatE	Family	47	207	5.4e-38	131.0	MatE
`XP_057785909.1`	Pfam	`PF01554`	MatE	Family	270	428	5.4e-38	131.0	MatE
`XP_057785911.1`	Pfam	`PF01554`	MatE	Family	47	207	9.4e-31	107.4	MatE
`XP_057785911.1`	Pfam	`PF01554`	MatE	Family	270	365	9.4e-31	107.4	MatE
`XP_057785917.1`	Pfam	`PF01554`	MatE	Family	47	207	9e-31	107.5	MatE
`XP_057785917.1`	Pfam	`PF01554`	MatE	Family	270	365	9e-31	107.5	MatE
`XP_057785929.1`	Pfam	`PF01554`	MatE	Family	47	207	1.4e-34	119.9	MatE
`XP_057785929.1`	Pfam	`PF01554`	MatE	Family	270	373	1.4e-34	119.9	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

8 records

下载 cDNA FASTA

XR_009094691.1
TTTTTTTTTTCCTTGAGATTCATAATTTACTAAACTGAACTTTCACATGGAGCATTAATTAGAAGCTTTAGTGTTTGTGAACGCAATTCCATGAAATTTATACTAAACTAAGCTTTCACATGGAGCCTCCAATTATTTTTCGAATTTTGCTAAAAATTTATTGTATGTAGTTTTATCTAAGACGAGATACAGGCGTGCTTGTTGCATTTGTGATTACTCAGTGAAGTAGGCCCGTTTTTACAGCAAGAAGAATGATTGAT...

XM_057929928.1
AGTTTTTTTTTTTTCCTTGAGATTCATAATTTACTAAACTGAACTTTCACATGGAGCATTAATTAGAAGCTTTAGTGTTTGTGAACGCAATTCCATGAAATTTATACTAAACTAAGCTTTCACATGGAGCCTCCAATTATTTTTCGAATTTTGCTAAAAATTTATTGTATGTAGTTTTATCTAAGACGAGATACAGGCGTGCTTGTTGCATTTGTGATTACTCAGTGAAGTAGGCCCGTTTTTACAGCAAGAAGAATGAT...

CDS

7 records

下载 CDS FASTA

LOC131003413
ATGATTGATGATCGCAGAGGCAGCATGGATCATAACAGCATTGAAGTGAGGCTCCTCACTCCTAAAGCAGAGGAAAAAGCAGGTGATTTGAAAGCAAGAATCTGCGAAGAATCAAAGAAAATATGGAGGGTTGCGACGCCAAGTGTGATCGCAAAAGTGAGCTCATTCGGCACCCTCGTCGTCACACAGTCCTTCGTGGGCCACATCAGCGCGGTCGATCTCGCCGGCTACGCTCTTGTCCAAACGCTAAGCGTGCGATT...

Protein

7 records

下载 Protein FASTA

XP_057785906.1
MIDDRRGSMDHNSIEVRLLTPKAEEKAGDLKARICEESKKIWRVATPSVIAKVSSFGTLVVTQSFVGHISAVDLAGYALVQTLSVRFVNGILIGMSSATQTLCGQAFGAKQYEMMGIHLQRSWLIDLITLTFLIPVFLFGASIFKLLGQEQGIVESAAYISLWFIPFVYALLFSLTIQMYLQAQQKNMVIAWLSALQFAIHIVCSWLFVYVADFGVAGAMAALCISSWFVVLGEFVYVFGGWCPETWRGFSVAAVKDLWP...

XP_057785907.1
MIDDRRGSMDHNSIEVRLLTPKAEEKAGDLKARICEESKKIWRVATPSVIAKVSSFGTLVVTQSFVGHISAVDLAGYALVQTLSVRFVNGILIGMSSATQTLCGQAFGAKQYEMMGIHLQRSWLIDLITLTFLIPVFLFGASIFKLLGQEQGIVESAAYISLWFIPFVYALLFSLTIQMYLQAQQKNMVIAWLSALQFAIHIVCSWLFVYVADFGVAGAMAALCISSWFVVLGEFVYVFGGWCPETWRGFSVAAVKDLWP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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