当前解析结果
SmilChr01G004552| 统一新 Gene ID | SmilChr01G004552 |
|---|---|
| 名称 | SmilChr01G004552 |
| 描述 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63627041 - 63631108 / - |
| NCBI Gene ID | LOC131004085 |
|---|---|
| GeneID | 131004085 |
| locus_tag | - |
| NCBI Name | LOC131004085 |
| 原始查询 | SmilChr01G004552 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 |
| 产物 | ABSCISIC ACID-INSENSITIVE 5-like protein 2 |
| Arabidopsis | AT3G56850 (AREB3)ABA-responsive element binding protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:824852] identity=56.3; qcov=0.926; evalue=7.19e-94; confidence=high |
| Rice | Os05g0489700 (HBF1)- identity=53.4; qcov=0.926; evalue=7.74e-88; confidence=high |
| GO | GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0045893 (positive regulation of DNA-templated transcription) |
| KEGG | smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00170 (bZIP_1); PF07716 (bZIP_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004085 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057786668.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057786668.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057786668.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057786668.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057786668.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63629780 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A3,B30 |
Chr1:63629858 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B113,B33,D4 |
Chr1:63630127 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C23,C48,C51 |
Chr1:63630153 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B1,B2,B50,B65 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057786668.1PF07716
bZIP_2 262-313 aa
PF00170
bZIP_1 266-311 aa
XP_057786674.1PF07716
bZIP_2 262-313 aa
PF00170
bZIP_1 266-311 aa
XP_057786683.1PF07716
bZIP_2 262-313 aa
PF00170
bZIP_1 266-311 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057786668.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 262 | 313 | 2.5e-10 | 41.0 | Basic region leucine zipper |
XP_057786668.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 266 | 311 | 2.2e-13 | 50.8 | bZIP transcription factor |
XP_057786674.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 262 | 313 | 2.5e-10 | 41.0 | Basic region leucine zipper |
XP_057786674.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 266 | 311 | 2.2e-13 | 50.8 | bZIP transcription factor |
XP_057786683.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 262 | 313 | 2.5e-10 | 41.0 | Basic region leucine zipper |
XP_057786683.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 266 | 311 | 2.2e-13 | 50.8 | bZIP transcription factor |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
3 records
下载 cDNA FASTA3 records
下载 CDS FASTA3 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。