Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004558

染色体: Chr01 坐标: 63670918-63672419 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004558
名称SmilChr01G004558
描述uncharacterized SmilChr01G004558
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向63670918 - 63672419 / +

ID 对照

NCBI Gene IDLOC131004149
GeneID131004149
locus_tag-
NCBI NameLOC131004149
原始查询SmilChr01G004558

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述DUF309 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:818711]; symbol=AT2G41120; hit=AT2G41120; species=arabidopsis; confidence=high
产物DUF309 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:818711]; symbol=AT2G41120; hit=AT2G41120; species=arabidopsis; confidence=high
ArabidopsisAT2G41120 (AT2G41120)
DUF309 domain protein [Source:NCBI gene (formerly Entrezgene);Acc:818711]
identity=56.8; qcov=0.909; evalue=5.46e-87; confidence=high
RiceOs11g0130200
-
identity=52.5; qcov=0.731; evalue=2.13e-61; confidence=high
GO-
KEGG-
PfamPF03745 (DUF309)
InterPro-
eggNOG-
NRGeneID:131004149

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057786754.1
2 Chloroplast stroma 叶绿体基质 0.80000 XP_057786754.1
3 Nucleus 细胞核 0.00000 XP_057786754.1
4 Chromosome 染色体 0.00000 XP_057786754.1
5 Centromere 着丝粒 0.00000 XP_057786754.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:63671890 C T EMS_canonical_SNV CDS_variant 1 B18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057786754.1
253 aa
N
1
126
253
DUF309
C
PF03745 DUF309 66-122 aa
XP_057786762.1
242 aa
N
1
121
242
DUF309
C
PF03745 DUF309 66-122 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057786754.1 Pfam PF03745 DUF309 Family 66 122 5.1e-23 81.2 Domain of unknown function (DUF309)
XP_057786762.1 Pfam PF03745 DUF309 Family 66 122 4.1e-23 81.6 Domain of unknown function (DUF309)

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057930779.1
ATGTATTCTACATTAACAAAAAATTTAAACAGTAGATAATCCATCATCATCTGAGAAACGATGTGATCAAAATTACGTTGGCAAAAATTGAATAAGAAAAATAAATGAAAATAGATGGTTGGATAAAAATGAGAAATTAGTAGGATATTTTAGTTGAGAAAATGAAGGGTCTAGCAGAAAGCAGGATCCCTTGCAAAAATGGCTGCTCTCATATCTTGTCTCCCAGGGCCAGCATCAACAACTCATCCAGCGTCACTCAA...
XM_057930771.1
TTTAAACAGTAGATAATCCATCATCATCTGAGAAACGATGTGATCAAAATTACGTTGGCAAAAATTGAATAAGAAAAATAAATGAAAATAGATGGTTGGATAAAAATGAGAAATTAGTAGGATATTTTAGTTGAGAAAATGAAGGGTCTAGCAGAAAGCAGGATCCCTTGCAAAAATGGCTGCTCTCATATCTTGTCTCCCAGGGCCAGCATCAACAACTCATCCAGCGTCACTCAAAAAATCATTGAAAACCAAAACTT...

CDS

2 records

下载 CDS FASTA
LOC131004149
ATGGCTGCTCTCATATCTTGTCTCCCAGGGCCAGCATCAACAACTCATCCAGCGTCACTCAAAAAATCATTGAAAACCAAAACTTTCTTCACCACTTGTTCTCCACCGTTTTCCAATCGAGGAATCGTAAAGGTAAGGAATTCGTACCGGATGAGCAGCCGCGGCATCACCCACGACGACGAAGAAATCTGCAGCTTCGACGAGGCAGTCTCGCTTTTCAACACAAGGGATTACTACAAATGCCACGACGTTCTCGAAGC...
LOC131004149
ATGGCTGCTCTCATATCTTGTCTCCCAGGGCCAGCATCAACAACTCATCCAGCGTCACTCAAAAAATCATTGAAAACCAAAACTTTCTTCACCACTTGTTCTCCACCGTTTTCCAATCGAGGAATCGTAAAGGTAAGGAATTCGTACCGGATGAGCAGCCGCGGCATCACCCACGACGACGAAGAAATCTGCAGCTTCGACGAGGCAGTCTCGCTTTTCAACACAAGGGATTACTACAAATGCCACGACGTTCTCGAAGC...

Protein

2 records

下载 Protein FASTA
XP_057786754.1
MAALISCLPGPASTTHPASLKKSLKTKTFFTTCSPPFSNRGIVKVRNSYRMSSRGITHDDEEICSFDEAVSLFNTRDYYKCHDVLEALWNNSQDPTRTLLHGILQCAVGFHHLFNHNHKGAMMELGEGLCKLRKMNFQNGPFHQFERDISAVLEFIYQTQLEQAACQYLSLSLSFLPIFVISFIHFKNPSRHRTSLCCNGSIREVVPASRGLCRRRASLPPRNRPELERLHRFLTGKVSPNSSSTAEYKDTTA
XP_057786762.1
MAALISCLPGPASTTHPASLKKSLKTKTFFTTCSPPFSNRGIVKVRNSYRMSSRGITHDDEEICSFDEAVSLFNTRDYYKCHDVLEALWNNSQDPTRTLLHGILQCAVGFHHLFNHNHKGAMMELGEGLCKLRKMNFQNGPFHQFERDISAVLEFIYQTQLEQAACTEQVCVAMDQSERSYQLLGGYAAGERLYHLEIDRSWNAYIVFLPEKYRQTAAAPPSIKIPLLEASEQHVMELDLPY

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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