Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004571`

染色体: Chr01 坐标: 63767802-63779065 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004571`
名称	SmilChr01G004571
描述	probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63767802 - 63779065 / `+`

ID 对照

NCBI Gene ID	`LOC131004302`
GeneID	`131004302`
locus_tag	`-`
NCBI Name	`LOC131004302`
原始查询	`SmilChr01G004571`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
产物	probable polyribonucleotide nucleotidyltransferase 1%2C chloroplastic
Arabidopsis	`AT3G03710` (RIF10) polyribonucleotide nucleotidyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:821181] identity=69.5; qcov=0.898; evalue=0; confidence=high
Rice	`Os07g0168000` (PNP1) - identity=76; qcov=0.812; evalue=0; confidence=high
GO	GO:0000175 (3'-5'-RNA exonuclease activity); GO:0000958 (mitochondrial mRNA catabolic process); GO:0000965 (mitochondrial RNA 3'-end processing); GO:0003723 (RNA binding); GO:0004654 (polyribonucleotide nucleotidyltransferase activity); GO:0005739 (mitochondrion); GO:0005829 (cytosol); GO:0009570 (chloroplast stroma)
KEGG	smil03018 (RNA degradation - Salvia miltiorrhiza (redroot sage))
Pfam	PF00013 (KH_1); PF00575 (S1); PF01138 (RNase_PH); PF03725 (RNase_PH_C)
InterPro	-
eggNOG	-
NR	GeneID:131004302

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057786935.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057786935.1`
3	Nucleus	细胞核	0.00000	`XP_057786935.1`
4	Chromosome	染色体	0.00000	`XP_057786935.1`
5	Centromere	着丝粒	0.00000	`XP_057786935.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63772816`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B101,D7,D9
`Chr1:63776340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B101,D7
`Chr1:63776346`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B121,B21,B28,C16
`Chr1:63776686`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr1:63778259`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C58

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057786935.1

968 aa

484

968

RNase_PH

RNase_PH_C

RNase_PH

KH_1

PF01138 RNase_PH 109-239 aa PF03725 RNase_PH_C 242-305 aa PF01138 RNase_PH 468-602 aa PF00013 KH_1 709-765 aa PF00575 S1 781-844 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057786935.1`	Pfam	`PF01138`	RNase_PH	Domain	109	239	4.1e-53	180.0	3' exoribonuclease family, domain 1
`XP_057786935.1`	Pfam	`PF03725`	RNase_PH_C	Domain	242	305	6.8e-19	68.3	3' exoribonuclease family, domain 2
`XP_057786935.1`	Pfam	`PF01138`	RNase_PH	Domain	468	602	4.1e-53	180.0	3' exoribonuclease family, domain 1
`XP_057786935.1`	Pfam	`PF00013`	KH_1	Domain	709	765	1.8e-06	28.3	KH domain
`XP_057786935.1`	Pfam	`PF00575`	S1	Domain	781	844	9.7e-11	42.6	S1 RNA binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057930952.1
TTTTTTTTTTTTCTCATTCGCAAAAATAAAGTGGATAAGCCTGCAAATAATACACACACTTCACACACACAGTGACAGTGAAGGTGAAGGAGAAGAAGCGGCAATGCTGGCAGCCAACCCTAATTATAGCTTCCACGTCCCTCTTTCGAAACTCAGAGCTTCGAGTTCCAAGAAATTCAAAATAATTTCTAATTTTTCGGCGATTAATTGCTTTCCTCGGTCGAAAAAAATTCACATTTCATCAATTCAGCCATCAAATG...

CDS

1 records

下载 CDS FASTA

LOC131004302
ATGCTGGCAGCCAACCCTAATTATAGCTTCCACGTCCCTCTTTCGAAACTCAGAGCTTCGAGTTCCAAGAAATTCAAAATAATTTCTAATTTTTCGGCGATTAATTGCTTTCCTCGGTCGAAAAAAATTCACATTTCATCAATTCAGCCATCAAATGCTGTTCACCGGACTCCGAAAACGAGAAAAAACAAAAGTAGAAACAGCGGTAACTTGTGCAATAGGTTTACTATTGGAGCTTGTTTAGCAGCAGAGCCAGGCAT...

Protein

1 records

下载 Protein FASTA

XP_057786935.1
MLAANPNYSFHVPLSKLRASSSKKFKIISNFSAINCFPRSKKIHISSIQPSNAVHRTPKTRKNKSRNSGNLCNRFTIGACLAAEPGIQSVDAPQQSFAPYSIKIPVGDRHILVETGHIGRQASAAVTVTDGETVIYTTVCFNDDPSEPTDFFPLSVHYQERFSAAGRTSGGFFKREGRTKDHEVLICRLIDRPLRPTMPKGFYHETQILSWVLSYDGLHPPDSLAVTAAGIAVALSEVPSSGVIAGVRIGLIGDKFVVNP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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