当前解析结果
SmilChr01G004573| 统一新 Gene ID | SmilChr01G004573 |
|---|---|
| 名称 | SmilChr01G004573 |
| 描述 | replication factor C subunit 3 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 63785657 - 63789611 / + |
| NCBI Gene ID | LOC131004523 |
|---|---|
| GeneID | 131004523 |
| locus_tag | - |
| NCBI Name | LOC131004523 |
| 原始查询 | SmilChr01G004573 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | replication factor C subunit 3 |
| 产物 | replication factor C subunit 3 |
| Arabidopsis | AT5G27740 (EMB2775)ATPase family associated with various cellular activities (AAA) [Source:NCBI gene (formerly Entrezgene);Acc:832836] identity=83.9; qcov=1; evalue=0; confidence=high |
| Rice | Os03g0792600 (RFC5)- identity=81.4; qcov=1; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003689 (DNA clamp loader activity); GO:0005634 (nucleus); GO:0005663 (DNA replication factor C complex); GO:0006261 (DNA-templated DNA replication); GO:0006281 (DNA repair); GO:0016887 (ATP hydrolysis activity) |
| KEGG | smil03030 (DNA replication - Salvia miltiorrhiza (redroot sage)); smil03410 (Base excision repair - Salvia miltiorrhiza (redroot sage)); smil03420 (Nucleotide excision repair - Salvia miltiorrhiza (redroot sage)); smil03430 (Mismatch repair - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00004 (AAA); PF03215 (Rad17); PF13177 (DNA_pol3_delta2); PF21960 (RCF1-5-like_lid); PF22534 (RFC_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004523 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057787213.1 |
| 2 | Chromosome | 染色体 | 0.80000 | XP_057787213.1 |
| 3 | Nucleoplasm | 核质 | 0.60000 | XP_057787213.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057787213.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057787213.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:63786805 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr1:63787494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B101,D7 |
Chr1:63787568 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C39 |
Chr1:63787568 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C39 |
Chr1:63788008 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B66,B88,C43,C48 |
Chr1:63788566 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787213.1PF03215
Rad17 2-56 aa
PF13177
DNA_pol3_delta2 18-188 aa
PF00004
AAA 37-181 aa
PF21960
RCF1-5-like_lid 197-236 aa
PF22534
RFC_C 253-347 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787213.1 |
Pfam | PF03215 |
Rad17 | Domain | 2 | 56 | 3.7e-06 | 27.7 | Rad17 P-loop domain |
XP_057787213.1 |
Pfam | PF13177 |
DNA_pol3_delta2 | Domain | 18 | 188 | 1.2e-11 | 45.6 | DNA polymerase III, delta subunit |
XP_057787213.1 |
Pfam | PF00004 |
AAA | Domain | 37 | 181 | 1.4e-07 | 32.7 | ATPase family associated with various cellular activities (AAA) |
XP_057787213.1 |
Pfam | PF21960 |
RCF1-5-like_lid | Domain | 197 | 236 | 5.4e-09 | 36.6 | RCF1/5-like, AAA+ ATPase lid domain |
XP_057787213.1 |
Pfam | PF22534 |
RFC_C | Domain | 253 | 347 | 2.8e-35 | 121.6 | Replication factor C subunit 3, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。