Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004575

染色体: Chr01 坐标: 63793365-63797673 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004575
名称SmilChr01G004575
描述NADH--cytochrome b5 reductase 1-like
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向63793365 - 63797673 / -

ID 对照

NCBI Gene IDLOC131004577
GeneID131004577
locus_tag-
NCBI NameLOC131004577
原始查询SmilChr01G004575

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述NADH--cytochrome b5 reductase 1-like
产物NADH--cytochrome b5 reductase 1-like
ArabidopsisAT5G17770 (CBR)
NADH:cytochrome B5 reductase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831645]
identity=81.7; qcov=1; evalue=7.89e-166; confidence=high
RiceOs05g0488900
-
identity=84.3; qcov=0.895; evalue=1.88e-162; confidence=high
GOGO:0004128 (cytochrome-b5 reductase activity, acting on NAD(P)H); GO:0022900 (electron transport chain)
KEGGsmil00541 (Biosynthesis of various nucleotide sugars - Salvia miltiorrhiza (redroot sage))
PfamPF00175 (NAD_binding_1); PF00970 (FAD_binding_6)
InterPro-
eggNOG-
NRGeneID:131004577

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 1.00000 XP_057787266.1
2 Mitochondrion membrane 线粒体膜 1.00000 XP_057787266.1
3 Mitochondrion outer membrane 线粒体外膜 0.80000 XP_057787266.1
4 Endoplasmic reticulum 内质网 0.20000 XP_057787266.1
5 Lipid droplet 脂滴 0.20000 XP_057787266.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:63796134 G A EMS_canonical_SNV CDS_variant 2 A18,B140
Chr1:63796159 C T EMS_canonical_SNV CDS_variant 4 A18,B140,B82,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057787266.1
277 aa
N
1
138
277
FAD_binding_6
NAD_binding_1
C
PF00970 FAD_binding_6 46-144 aa PF00175 NAD_binding_1 154-260 aa
XP_057787273.1
277 aa
N
1
138
277
FAD_binding_6
NAD_binding_1
C
PF00970 FAD_binding_6 46-144 aa PF00175 NAD_binding_1 154-260 aa
XP_057787277.1
277 aa
N
1
138
277
FAD_binding_6
NAD_binding_1
C
PF00970 FAD_binding_6 46-144 aa PF00175 NAD_binding_1 154-260 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057787266.1 Pfam PF00970 FAD_binding_6 Domain 46 144 5.4e-35 120.5 Oxidoreductase FAD-binding domain
XP_057787266.1 Pfam PF00175 NAD_binding_1 Domain 154 260 4.5e-31 108.5 Oxidoreductase NAD-binding domain
XP_057787273.1 Pfam PF00970 FAD_binding_6 Domain 46 144 5.4e-35 120.5 Oxidoreductase FAD-binding domain
XP_057787273.1 Pfam PF00175 NAD_binding_1 Domain 154 260 4.5e-31 108.5 Oxidoreductase NAD-binding domain
XP_057787277.1 Pfam PF00970 FAD_binding_6 Domain 46 144 5.4e-35 120.5 Oxidoreductase FAD-binding domain
XP_057787277.1 Pfam PF00175 NAD_binding_1 Domain 154 260 4.5e-31 108.5 Oxidoreductase NAD-binding domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057931290.1
ATAATTGTAGTTAAGTGTATTGTTAGTGAATAATGACGTTTAAATTAAATTAAAATGGTGAACCATTATATAGTAAATATGTAAATAAGTTAATATATTGAAGGTAATATACATTCATTTATTGTAGGAATAGAAATATTTTTTGTGAATATTTCAAAATAAAAAAAGAGTCAACTTTTGAGATAGCATAAAACTCAATATTTGATCATCCATCTTAAAAACAAAAAATTTGGATATTTTTGCAATTTCGGACTGTATTG...
XM_057931294.1
GATAATTTCTCTCACCAGATCTTTCTCACTCACAATTTCTTTTTCCCCACCTACTCCCATTGCTTGCGCGTACTGTTGCATTCAGCCCTATTTTCATTTACTTATTTTGTTAAATACTCTTAATTGGACTCATTGTAGCATTATTCCAAACTGTGGACTCAAGTGGTTTAAGTTATTGGAGCTATGGATTTCCTGGCGACATCTGAAGGCCAACTAGTAGTTGGAGTTGCCGTCGGTCTCGTAGCTATTGCTGCTGCCTA...

CDS

3 records

下载 CDS FASTA
LOC131004577
ATGGATTTCCTGGCGACATCTGAAGGCCAACTAGTAGTTGGAGTTGCCGTCGGTCTCGTAGCTATTGCTGCTGCCTACTTCTTGTTTTCCTCCAAGAAGCCTAAAGTGTGCTTGGATGCCGAGAATTTCAAGGAATTTAAGCTTGTGAAGAAAACACAACTCAGCCATAACGTGGCTAAGTTCAGATTTGCTCTTCCTACGCCTACTTCTGTATTGGGTCTTCCTATTGGACAACACATAAGCTGCAGGGGTAAGGATAG...
LOC131004577
ATGGATTTCCTGGCGACATCTGAAGGCCAACTAGTAGTTGGAGTTGCCGTCGGTCTCGTAGCTATTGCTGCTGCCTACTTCTTGTTTTCCTCCAAGAAGCCTAAAGTGTGCTTGGATGCCGAGAATTTCAAGGAATTTAAGCTTGTGAAGAAAACACAACTCAGCCATAACGTGGCTAAGTTCAGATTTGCTCTTCCTACGCCTACTTCTGTATTGGGTCTTCCTATTGGACAACACATAAGCTGCAGGGGTAAGGATAG...

Protein

3 records

下载 Protein FASTA
XP_057787266.1
MDFLATSEGQLVVGVAVGLVAIAAAYFLFSSKKPKVCLDAENFKEFKLVKKTQLSHNVAKFRFALPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMKEGDYLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMFQVARAILENPSDRTKVHLIYANVTSDDILLKDEIDGLAKNYPDQFKVYYVLNQPPEVWNGGVGFVSKEMIQEHCPPPASDIKILRCGPPPMNKAM...
XP_057787273.1
MDFLATSEGQLVVGVAVGLVAIAAAYFLFSSKKPKVCLDAENFKEFKLVKKTQLSHNVAKFRFALPTPTSVLGLPIGQHISCRGKDSQGEEVIKPYTPTTLDSDVGYFELVIKMYPQGRMSHHFREMKEGDYLAVKGPKGRFRYQPGQVRAFGMLAGGSGITPMFQVARAILENPSDRTKVHLIYANVTSDDILLKDEIDGLAKNYPDQFKVYYVLNQPPEVWNGGVGFVSKEMIQEHCPPPASDIKILRCGPPPMNKAM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器