Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004599`

染色体: Chr01 坐标: 63981808-63989116 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004599`
名称	SmilChr01G004599
描述	plasma membrane ATPase 4
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	63981808 - 63989116 / `+`

ID 对照

NCBI Gene ID	`LOC131004309`
GeneID	`131004309`
locus_tag	`-`
NCBI Name	`LOC131004309`
原始查询	`SmilChr01G004599`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	plasma membrane ATPase 4
产物	plasma membrane ATPase 4
Arabidopsis	`AT4G30190` (HA2) H[+]-ATPase 2 [Source:NCBI gene (formerly Entrezgene);Acc:829142] identity=87.5; qcov=0.993; evalue=0; confidence=high
Rice	`Os04g0656100` (AHA7) - identity=87.9; qcov=1; evalue=0; confidence=high
GO	GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0008553 (P-type proton-exporting transporter activity); GO:0016887 (ATP hydrolysis activity); GO:0051453 (regulation of intracellular pH); GO:0120029 (proton export across plasma membrane)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00122 (E1-E2_ATPase); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF13246 (Cation_ATPase)
InterPro	-
eggNOG	-
NR	GeneID:131004309

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057786945.1`
2	Vacuole	液泡	0.20000	`XP_057786945.1`
3	Vacuole membrane	液泡膜	0.20000	`XP_057786945.1`
4	Nucleus	细胞核	0.00000	`XP_057786945.1`
5	Chromosome	染色体	0.00000	`XP_057786945.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:63982081`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B66,C20,C69
`Chr1:63982099`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B66,C20,C69
`Chr1:63982116`	`GA`	`G`	1bp_deletion	frameshift_variant	41	A1,A13,A15,A16,A2,A23,A5,B106,B119,B123,B126,B135,B23,B24,B26,B27,B46,B48,B50,B6,B62,B67,B69,B70,B74,B84,B91,C13,C14,C15,C2,C23,C27,C36,C37,C47,C52,C60,C63,C64,C80
`Chr1:63985308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C18
`Chr1:63985641`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A14,C17,C38,C62,D3
`Chr1:63985644`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,C17,C38,C62,D3
`Chr1:63985662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A14,C17,C38,C62,D3
`Chr1:63985733`	`A`	`AC`	1bp_insertion	frameshift_variant	13	B12,B26,B29,B50,B53,B68,C17,C31,C33,C50,C74,D5,D8
`Chr1:63986043`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B1
`Chr1:63986248`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:63986759`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B133,C14
`Chr1:63986778`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057786945.1

963 aa

482

963

Cation_ATPase_N

E1-E2_ATPase

Hydrolase

Cation_ATPase

PF00690 Cation_ATPase_N 21-84 aa PF00122 E1-E2_ATPase 134-232 aa PF00702 Hydrolase 328-605 aa PF13246 Cation_ATPase 376-496 aa

XP_057786948.1

954 aa

477

954

Cation_ATPase_N

E1-E2_ATPase

Hydrolase

Cation_ATPase

PF00690 Cation_ATPase_N 21-84 aa PF00122 E1-E2_ATPase 134-232 aa PF00702 Hydrolase 328-605 aa PF13246 Cation_ATPase 376-496 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057786945.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	21	84	1.9e-15	57.0	Cation transporter/ATPase, N-terminus
`XP_057786945.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	134	232	3.9e-32	110.8	P-type ATPase actuator domain
`XP_057786945.1`	Pfam	`PF00702`	Hydrolase	Domain	328	605	2.1e-13	51.8	haloacid dehalogenase-like hydrolase
`XP_057786945.1`	Pfam	`PF13246`	Cation_ATPase	Family	376	496	5.2e-08	33.6	P-type ATPase, cytoplasmic domain N
`XP_057786948.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	21	84	1.8e-15	57.1	Cation transporter/ATPase, N-terminus
`XP_057786948.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	134	232	3.7e-32	110.9	P-type ATPase actuator domain
`XP_057786948.1`	Pfam	`PF00702`	Hydrolase	Domain	328	605	1.8e-13	52.1	haloacid dehalogenase-like hydrolase
`XP_057786948.1`	Pfam	`PF13246`	Cation_ATPase	Family	376	496	4.8e-08	33.7	P-type ATPase, cytoplasmic domain N

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057930962.1
CTCATTGTAGAGAGAGAGAGGGGGGCCACTTGGGGGAGGGAGGGGTTGGGGTCGAGACATACGGCGGGTATCATATTTGTAGACGTATAAAACGGGGGTGAGAGGCAGAGCACTTCTTCCAAGAGAGGAGTTCTAGTTTCTCTTTACATCTTCCTCTCTTGGAATGAGAGCTCGTTCATTAAATTACTGAACTCTTCCTCTCTCGCTCTTCACATCTCTCTGATCTAGCGGGGGAGAAATCCTTGCCAGTGCTTTGAAGG...

XM_057930965.1
CTCATTGTAGAGAGAGAGAGGGGGGCCACTTGGGGGAGGGAGGGGTTGGGGTCGAGACATACGGCGGGTATCATATTTGTAGACGTATAAAACGGGGGTGAGAGGCAGAGCACTTCTTCCAAGAGAGGAGTTCTAGTTTCTCTTTACATCTTCCTCTCTTGGAATGAGAGCTCGTTCATTAAATTACTGAACTCTTCCTCTCTCGCTCTTCACATCTCTCTGATCTAGCGGGGGAGAAATCCTTGCCAGTGCTTTGAAGG...

CDS

2 records

下载 CDS FASTA

LOC131004309
ATGGGTGGTGATAAAGCAATCAGTCTTGAAGAGATTAAGAATGAGACTGTTGATCTGGAAAAAGTCCCAATTGAGGAAGTCTTTGAGCAATTGAAATGCACCAGGGAGGGACTAAGTACCGAAGAAGGGGCCAACAGGCTTCAAATTTTCGGCCCTAACAAGTTGGAAGAGAAGAAGGAAAGCAAATTTCTCAAGTTCCTTGGTTTCATGTGGAATCCACTCTCTTGGGTGATGGAGGCTGCAGCTATCATGGCCATTGC...

Protein

2 records

下载 Protein FASTA

XP_057786945.1
MGGDKAISLEEIKNETVDLEKVPIEEVFEQLKCTREGLSTEEGANRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNAYDEVFSGSTCKQGELEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGM...

XP_057786948.1
MGGDKAISLEEIKNETVDLEKVPIEEVFEQLKCTREGLSTEEGANRLQIFGPNKLEEKKESKFLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIVCLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWSEQEAAILVPGDIISIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNAYDEVFSGSTCKQGELEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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