当前解析结果
SmilChr01G004608| 统一新 Gene ID | SmilChr01G004608 |
|---|---|
| 名称 | SmilChr01G004608 |
| 描述 | VIN3-like protein 2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 64049753 - 64054345 / - |
| NCBI Gene ID | LOC131004347 |
|---|---|
| GeneID | 131004347 |
| locus_tag | - |
| NCBI Name | LOC131004347 |
| 原始查询 | SmilChr01G004608 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | VIN3-like protein 2 |
| 产物 | VIN3-like protein 2 |
| Arabidopsis | AT4G30200 (VEL1)vernalization5/VIN3-like protein [Source:NCBI gene (formerly Entrezgene);Acc:829143] identity=45.5; qcov=1.04; evalue=0; confidence=high |
| Rice | Os02g0152500 (LC2)- identity=39.7; qcov=1.04; evalue=1.7e-164; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0010048 (vernalization response); GO:0040029 (epigenetic regulation of gene expression) |
| KEGG | - |
| Pfam | PF07227 (PHD_Oberon); PF23376 (Fn3_VIN3); PF23380 (VIN3_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004347 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057786982.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057786982.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057786982.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057786982.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057786982.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:64050179 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C80 |
Chr1:64050395 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr1:64050401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A2,A24,C1,C49,C85 |
Chr1:64050417 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B114,B139,C38,C75 |
Chr1:64050421 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr1:64050457 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B133,C14 |
Chr1:64050471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B121,B21,B28,C16,C7 |
Chr1:64050811 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C40 |
Chr1:64051284 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:64051824 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr1:64052311 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C71 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057786982.1PF07227
PHD_Oberon 141-260 aa
PF23376
Fn3_VIN3 346-432 aa
PF23380
VIN3_C 640-713 aa
XP_057786993.1PF07227
PHD_Oberon 141-260 aa
PF23376
Fn3_VIN3 346-432 aa
PF23380
VIN3_C 640-713 aa
XP_057787002.1PF07227
PHD_Oberon 141-260 aa
PF23376
Fn3_VIN3 346-432 aa
PF23380
VIN3_C 640-713 aa
XP_057787011.1PF07227
PHD_Oberon 121-240 aa
PF23376
Fn3_VIN3 326-412 aa
PF23380
VIN3_C 620-693 aa
XP_057787016.1PF07227
PHD_Oberon 121-240 aa
PF23376
Fn3_VIN3 326-412 aa
PF23380
VIN3_C 620-693 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057786982.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 141 | 260 | 3.4e-34 | 118.2 | PHD - plant homeodomain finger protein |
XP_057786982.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 346 | 432 | 9.6e-29 | 100.1 | VIN3-like, fibronectin type-III domain |
XP_057786982.1 |
Pfam | PF23380 |
VIN3_C | Domain | 640 | 713 | 8.4e-38 | 128.7 | VIN3-like, C-terminal domain |
XP_057786993.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 141 | 260 | 3.4e-34 | 118.2 | PHD - plant homeodomain finger protein |
XP_057786993.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 346 | 432 | 9.6e-29 | 100.1 | VIN3-like, fibronectin type-III domain |
XP_057786993.1 |
Pfam | PF23380 |
VIN3_C | Domain | 640 | 713 | 8.4e-38 | 128.7 | VIN3-like, C-terminal domain |
XP_057787002.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 141 | 260 | 3.4e-34 | 118.2 | PHD - plant homeodomain finger protein |
XP_057787002.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 346 | 432 | 9.6e-29 | 100.1 | VIN3-like, fibronectin type-III domain |
XP_057787002.1 |
Pfam | PF23380 |
VIN3_C | Domain | 640 | 713 | 8.4e-38 | 128.7 | VIN3-like, C-terminal domain |
XP_057787011.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 121 | 240 | 3.2e-34 | 118.3 | PHD - plant homeodomain finger protein |
XP_057787011.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 326 | 412 | 9.2e-29 | 100.1 | VIN3-like, fibronectin type-III domain |
XP_057787011.1 |
Pfam | PF23380 |
VIN3_C | Domain | 620 | 693 | 8.1e-38 | 128.8 | VIN3-like, C-terminal domain |
XP_057787016.1 |
Pfam | PF07227 |
PHD_Oberon | Family | 121 | 240 | 3.2e-34 | 118.3 | PHD - plant homeodomain finger protein |
XP_057787016.1 |
Pfam | PF23376 |
Fn3_VIN3 | Domain | 326 | 412 | 9.2e-29 | 100.1 | VIN3-like, fibronectin type-III domain |
XP_057787016.1 |
Pfam | PF23380 |
VIN3_C | Domain | 620 | 693 | 8.1e-38 | 128.8 | VIN3-like, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
5 records
下载 cDNA FASTA5 records
下载 CDS FASTA5 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。