Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004609`

染色体: Chr01 坐标: 64061550-64064644 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004609`
名称	SmilChr01G004609
描述	AP2-like ethylene-responsive transcription factor AIL5
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	64061550 - 64064644 / `-`

ID 对照

NCBI Gene ID	`LOC131004436`
GeneID	`131004436`
locus_tag	`-`
NCBI Name	`LOC131004436`
原始查询	`SmilChr01G004609`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AP2-like ethylene-responsive transcription factor AIL5
产物	AP2-like ethylene-responsive transcription factor AIL5
Arabidopsis	`AT5G57390` (AIL5) AINTEGUMENTA-like 5 [Source:NCBI gene (formerly Entrezgene);Acc:835845] identity=54.5; qcov=1.05; evalue=2.13e-152; confidence=high
Rice	`Os06g0657500` (OsPLT2) - identity=64.5; qcov=0.762; evalue=1.11e-136; confidence=high
GO	GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription)
KEGG	-
Pfam	PF00847 (AP2)
InterPro	-
eggNOG	-
NR	GeneID:131004436

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057787113.1`
2	Chromosome	染色体	0.00000	`XP_057787113.1`
3	Centromere	着丝粒	0.00000	`XP_057787113.1`
4	Chromatin	染色质	0.00000	`XP_057787113.1`
5	Telomere	端粒	0.00000	`XP_057787113.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:64061836`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	C64
`Chr1:64061836`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C64
`Chr1:64061846`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B13,C53
`Chr1:64061853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B65
`Chr1:64061883`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64061926`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr1:64062240`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64062285`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr1:64062365`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64062374`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B50,D11
`Chr1:64062868`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B64,B84
`Chr1:64063691`	`CAG`	`C`	2bp_deletion	frameshift_variant	2	B2,B46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787113.1

455 aa

228

455

AP2

PF00847 AP2 127-185 aa PF00847 AP2 230-279 aa

XP_057787122.1

454 aa

227

454

AP2

PF00847 AP2 127-184 aa PF00847 AP2 229-278 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787113.1`	Pfam	`PF00847`	AP2	Domain	127	185	5.7e-20	72.1	AP2 domain
`XP_057787113.1`	Pfam	`PF00847`	AP2	Domain	230	279	5.7e-20	72.1	AP2 domain
`XP_057787122.1`	Pfam	`PF00847`	AP2	Domain	127	184	2.7e-22	79.5	AP2 domain
`XP_057787122.1`	Pfam	`PF00847`	AP2	Domain	229	278	2.7e-22	79.5	AP2 domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931139.1
CAAGAACACCAGTTTACACAAAAATAGCAAATATTAAGAGAGCCTCGTTAGTCGTGCACATTTCTTTTCACCGCCTGGATTTATATCTGTGTTCCACTCTCCTCTTCATGTTTTCATTTTCACACATGTAATTTACCCTCTCTCTCTCTAGAAAACAGTGAGTCCAGCGCTGTTTCCCAAAGAAAACCCTCTCATCATCGTCATCTCTCTGCGTCTAAATTTTCACGCTCACCGACGATAATGGATATGGATTCTTCCCA...

XM_057931130.1
CAAGAACACCAGTTTACACAAAAATAGCAAATATTAAGAGAGCCTCGTTAGTCGTGCACATTTCTTTTCACCGCCTGGATTTATATCTGTGTTCCACTCTCCTCTTCATGTTTTCATTTTCACACATGTAATTTACCCTCTCTCTCTCTAGAAAACAGTGAGTCCAGCGCTGTTTCCCAAAGAAAACCCTCTCATCATCGTCATCTCTCTGCGTCTAAATTTTCACGCTCACCGACGATAATGGATATGGATTCTTCCCA...

CDS

2 records

下载 CDS FASTA

LOC131004436
ATGGATATGGATTCTTCCCATCCCAACTGGCTCGTCTTCTCGCTTTCCAACCACTCCCTTTTCCAACCCTCTTTCACCTCCAACCCTAGTAGTAGCAGCAGTGCAGTGGATCATCATCAAGATAATGGAAGCGGCGCCGTTCTCGGAGGCGGCCCTAAGCTGGAGGATTTCCTGGGTAGCTCCGGCGGCGCTGCGGTGGCTCAGTTTGACGGCATGCCGGAGATGGAGATATATGATGACTCCGAGCTCAAGACAATTGC...

Protein

2 records

下载 Protein FASTA

XP_057787113.1
MDMDSSHPNWLVFSLSNHSLFQPSFTSNPSSSSSAVDHHQDNGSGAVLGGGPKLEDFLGSSGGAAVAQFDGMPEMEIYDDSELKTIAASFLRGFSTEQTNTNLQKQTAAAPPPKKAVETFGQRTSIFRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGLYLCGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEREMEEMKHMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTF...

XP_057787122.1
MDMDSSHPNWLVFSLSNHSLFQPSFTSNPSSSSSAVDHHQDNGSGAVLGGGPKLEDFLGSSGGAAVAQFDGMPEMEIYDDSELKTIAASFLRGFSTEQTNTNLQKQTAAAPPPKKAVETFGQRTSIFRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPTTTTNFPVSDYEREMEEMKHMTRQEFVASLRRRSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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