Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004613

染色体: Chr01 坐标: 64086966-64088684 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004613
名称SmilChr01G004613
描述uncharacterized SmilChr01G004613
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向64086966 - 64088684 / -

ID 对照

NCBI Gene IDLOC131004545
GeneID131004545
locus_tag-
NCBI NameLOC131004545
原始查询SmilChr01G004613

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述oxysterol-binding 4B-like protein [Source:NCBI gene (formerly Entrezgene);Acc:3769784]; symbol=AT4G25845; hit=AT4G25845; species=arabidopsis; confidence=weak
产物oxysterol-binding 4B-like protein [Source:NCBI gene (formerly Entrezgene);Acc:3769784]; symbol=AT4G25845; hit=AT4G25845; species=arabidopsis; confidence=weak
ArabidopsisAT4G25845 (AT4G25845)
oxysterol-binding 4B-like protein [Source:NCBI gene (formerly Entrezgene);Acc:3769784]
identity=58.5; qcov=0.126; evalue=6.51e-09; confidence=weak
RiceOs01g0166500 (P0028E10.1)
-
identity=50; qcov=0.172; evalue=4.59e-06; confidence=weak
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131004545

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 0.60000 XP_057787241.1
2 Cell membrane 细胞膜 0.40000 XP_057787241.1
3 Cytoplasm 细胞质 0.20000 XP_057787241.1
4 Cytosol 细胞质基质 0.20000 XP_057787241.1
5 Chromosome 染色体 0.00000 XP_057787241.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:64087335 G A EMS_canonical_SNV CDS_variant 3 C43,C74,D8
Chr1:64087351 AC A 1bp_deletion frameshift_variant 66 A13,A15,A19,A5,A7,A9,B10,B101,B106,B110,B111,B115,B118,B119,B128,B129,B131,B134,B2,B20,B23,B27,B29,B34,B35,B38,B39,B42,B43,B45,B46,B47,B52,B60,B61,B67,B71,B72,B80,B86,B9,B90,B91,B92,B93,B94,B99,C12,C13,C16,C26,C30,C33,C4,C40,C44,C45,C56,C58,C60,C7,C72,C82,C87,D1,D3
Chr1:64087353 GAC G 2bp_deletion frameshift_variant 66 A13,A15,A19,A5,A7,A9,B10,B101,B106,B110,B111,B115,B118,B119,B128,B129,B131,B134,B2,B20,B23,B27,B29,B34,B35,B38,B39,B42,B43,B45,B46,B47,B52,B60,B61,B67,B71,B72,B80,B86,B9,B90,B91,B92,B93,B94,B99,C12,C13,C16,C26,C30,C33,C4,C40,C44,C45,C56,C58,C60,C7,C72,C82,C87,D1,D3
Chr1:64087715 AT A 1bp_deletion frameshift_variant 2 C26,C33
Chr1:64087715 AT A 1bp_deletion CDS_variant 2 C26,C33
Chr1:64087948 T TC 1bp_insertion frameshift_variant 2 B27,C47
Chr1:64087948 T TC 1bp_insertion CDS_variant 2 B27,C47
Chr1:64087954 C T EMS_canonical_SNV CDS_variant 2 B11,B17
Chr1:64088006 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:64088021 G A EMS_canonical_SNV CDS_variant 2 C1,C17
Chr1:64088047 G A EMS_canonical_SNV CDS_variant 1 D11
Chr1:64088075 G A EMS_canonical_SNV CDS_variant 3 B11,B17,D11

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057931258.1
TTTTCTTTTTCTATCAAAGTTGAAGCTACCGACGCACTAAGAAAGTATGAATGGGCCATCACTTTAATTTGATCTGTGGGACTATACGAACCATCTGAGGAGAGACCAATTGATTCGTTGTTGAGGTGGGGTTGATGAAAACCAAAGGAAAATGGTAGCTCCAGTAGAAGTTAGTTGTGCACATGACCCCAAAAAAACCTTAACGTGACCTTGAAATCGAAGGTGGCCTCTTTGCTTGCCTTTGTCAAAAAGAAGTAGTT...

CDS

1 records

下载 CDS FASTA
LOC131004545
ATGGAATTAAAAAGTAGAGATGAAAATGAAGAGCCAAAAAAGGCAGTTTCTGTGCTGCAAGGCGATGGGATTTGCATGAGCAGAATTCTTGCTAGGGAATCCTCAGCGGGCCAATCTTCACGTGTGTTTTATCGATCCAACGAAGGCGTTCCATTTGGATGGGAAATGCAGCCAGGAACAGCCAAGAACCCACAGCAAGATGAAGACGTGATCCCCCCAATTTGCCCCTCCCCACTGATGCAGAGCTTGCATCTGGATCT...

Protein

1 records

下载 Protein FASTA
XP_057787241.1
MELKSRDENEEPKKAVSVLQGDGICMSRILARESSAGQSSRVFYRSNEGVPFGWEMQPGTAKNPQQDEDVIPPICPSPLMQSLHLDLPPPPLKTSKIWRLREMIMMKKAGGRNKEQESSRFPSTSTSTFSSATSRVVDVSMVDGPFIPAILEQGKTRIYYCSLHNNAFAVEQGNLYVTRFLSEPEQFSGPLHGGDSAVGVPFGWEMHPGTPKAAGDEEIIPPPSPPPAAQSLSLPRPDMKAKRSTWRKAWFWIRRRKTKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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