Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004634`

染色体: Chr01 坐标: 64360297-64367470 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004634`
名称	SmilChr01G004634
描述	uncharacterized SmilChr01G004634
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	64360297 - 64367470 / `+`

ID 对照

NCBI Gene ID	`LOC131004937`
GeneID	`131004937`
locus_tag	`-`
NCBI Name	`LOC131004937`
原始查询	`SmilChr01G004634`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	FGGY family of carbohydrate kinase [Source:NCBI gene (formerly Entrezgene);Acc:829154]; symbol=AT4G30310; hit=AT4G30310; species=arabidopsis; confidence=high
产物	FGGY family of carbohydrate kinase [Source:NCBI gene (formerly Entrezgene);Acc:829154]; symbol=AT4G30310; hit=AT4G30310; species=arabidopsis; confidence=high
Arabidopsis	`AT4G30310` (AT4G30310) FGGY family of carbohydrate kinase [Source:NCBI gene (formerly Entrezgene);Acc:829154] identity=75.2; qcov=0.996; evalue=0; confidence=high
Rice	`Os02g0177900` - identity=74.1; qcov=0.8; evalue=0; confidence=high
GO	GO:0005975 (carbohydrate metabolic process); GO:0016301 (kinase activity); GO:0016773 (phosphotransferase activity, alcohol group as acceptor)
KEGG	smil00040 (Pentose and glucuronate interconversions - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00370 (FGGY_N); PF02782 (FGGY_C)
InterPro	-
eggNOG	-
NR	GeneID:131004937

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057787691.1`
2	Cytoplasm	细胞质	0.80000	`XP_057787681.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057787681.1`
4	Nucleus	细胞核	0.00000	`XP_057787691.1`
5	Chromosome	染色体	0.00000	`XP_057787691.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:64360712`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64361785`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:64363583`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:64365770`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B64
`Chr1:64365770`	`AG`	`A`	1bp_deletion	CDS_variant	1	B64
`Chr1:64367239`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B114

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787681.1

622 aa

311

622

FGGY_N

FGGY_C

PF00370 FGGY_N 45-316 aa PF02782 FGGY_C 343-561 aa

XP_057787691.1

474 aa

237

474

FGGY_C

PF02782 FGGY_C 195-413 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787681.1`	Pfam	`PF00370`	FGGY_N	Domain	45	316	6.7e-21	75.7	FGGY family of carbohydrate kinases, N-terminal domain
`XP_057787681.1`	Pfam	`PF02782`	FGGY_C	Domain	343	561	2e-53	181.9	FGGY family of carbohydrate kinases, C-terminal domain
`XP_057787691.1`	Pfam	`PF02782`	FGGY_C	Domain	195	413	1.1e-53	182.8	FGGY family of carbohydrate kinases, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931698.1
ATGAAAGGACAAAAGAAACAGATCCACAACCATGACAGATAATTAACTTATTTTTTGAAGCCAAAAAATAGAAATGTGAGCAAGTTAATTCAGTGAAGAATCCGAGTAAGCAGCTTGAGATTGCTAATCTTAGCGGTCATAAATCATTATCACTCATTAACAAAAGAATCTGTAACGATCAAAATAAAAACGAAAAGGAAGAAAATGTCAAAATCCTAACGGAAAACCTGAGAAATAGCGTCCAATAATACTAAAATTAA...

XM_057931708.1
CAATCTTCAACCGATATCTGGCATGCGATTTGCACAGCTGTCAGATCGGCATGCTCTCTTGCACAAATTAAAGGGGAACAAGTGACCAGTTTGGGTTTTGCTGCTACTTGTTCACTTGGGGAAATTGGTCTTGTGTGCAGTTGCTATTGATTGTGATGGAGAACCTGTGACAGTTTCTTTGTCTCACGACTCAAGGAGGAATGTCATAGTGTGGATGGACCACAGAGCTGTAAAGCAGAGTGAGAGAATTAATTTATCCA...

CDS

2 records

下载 CDS FASTA

LOC131004937
ATGTCTGGCGCATATCGACTGACAGACAGAACGGCGTTTATCGACTCACCCAGCCAGCTTCACCGCTCCTCCGCCGTCGAGATGACCACTCCCAACAACCCTATCACGCCGCGCAGCCGCAGCGGCCCTATTTTCCTCGGTGTCGACGTCGGCACCGCTAGCGCACGTGCAGCCCTTTTTAATAACAGTGGGCGGCTTTTGGGTTCTGCTACTAGCCCCATTCAGATCTGGAAAGATGGTGACTGCGTTGAGCAATCTTC...

LOC131004937
ATGGACCACAGAGCTGTAAAGCAGAGTGAGAGAATTAATTTATCCAAGTCACCAGTTCTGGAGTATTGCGGTGGGACTGTATCACCTGAGATGCAGACACCAAAGCTTCTGTGGGTGAAAGAAAATTTGAGGGAGTCCTGGTCAATGACATTTAGGTGGATGGATCTGAGTGATTGGTTATCATATAGAGCAACAGGAGATGATACTCGGAGTTTATGCACAACAGTCTGCAAATGGACTTATTTGGGCCATGCGCATAT...

Protein

2 records

下载 Protein FASTA

XP_057787681.1
MSGAYRLTDRTAFIDSPSQLHRSSAVEMTTPNNPITPRSRSGPIFLGVDVGTASARAALFNNSGRLLGSATSPIQIWKDGDCVEQSSTDIWHAICTAVRSACSLAQIKGEQVTSLGFAATCSLVAIDCDGEPVTVSLSHDSRRNVIVWMDHRAVKQSERINLSKSPVLEYCGGTVSPEMQTPKLLWVKENLRESWSMTFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQINEIDSRDMEALGWDDEFWEEIG...

XP_057787691.1
MDHRAVKQSERINLSKSPVLEYCGGTVSPEMQTPKLLWVKENLRESWSMTFRWMDLSDWLSYRATGDDTRSLCTTVCKWTYLGHAHMQQINEIDSRDMEALGWDDEFWEEIGLGDLVDSHHSKIGRSVAFPGHALGSGLTPDAAKELGLLPGTPVGTSLIDAHAGGVGVMESVPAEITEHESSEDEEEAICHRMVLVCGTSNCHMAISKTKLFIPGVWGPFWSAMVPEYWLTEGGQSASGALFDYILEGHVASQGLANRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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