Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004644`

染色体: Chr01 坐标: 64486759-64489939 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004644`
名称	SmilChr01G004644
描述	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	64486759 - 64489939 / `+`

ID 对照

NCBI Gene ID	`LOC131004988`
GeneID	`131004988`
locus_tag	`-`
NCBI Name	`LOC131004988`
原始查询	`SmilChr01G004644`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic
产物	probable 1-deoxy-D-xylulose-5-phosphate synthase 2%2C chloroplastic
Arabidopsis	`AT4G15560` (CLA1) Deoxyxylulose-5-phosphate synthase [Source:NCBI gene (formerly Entrezgene);Acc:827230] identity=73.4; qcov=0.897; evalue=0; confidence=high
Rice	`Os07g0190000` (OsDXS) - identity=77.8; qcov=0.924; evalue=0; confidence=high
GO	GO:0008661 (1-deoxy-D-xylulose-5-phosphate synthase activity); GO:0016114 (terpenoid biosynthetic process)
KEGG	smil00730 (Thiamine metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00676 (E1_dh); PF02779 (Transket_pyr); PF02780 (Transketolase_C); PF13292 (DXP_synthase_N)
InterPro	-
eggNOG	-
NR	GeneID:131004988

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057787752.1`
2	Chloroplast stroma	叶绿体基质	1.00000	`XP_057787752.1`
3	Nucleus	细胞核	0.00000	`XP_057787752.1`
4	Chromosome	染色体	0.00000	`XP_057787752.1`
5	Centromere	着丝粒	0.00000	`XP_057787752.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:64487220`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B123
`Chr1:64487302`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A1,B41
`Chr1:64487318`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B9
`Chr1:64487682`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:64488038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B24,C65,C66,D7
`Chr1:64488212`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,C19
`Chr1:64488335`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr1:64489337`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B41,B65,B83,C59,D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787752.1

725 aa

362

725

DXP_synthase_N

E1_dh

Transket_pyr

Transketolase_C

PF13292 DXP_synthase_N 80-365 aa PF00676 E1_dh 190-251 aa PF02779 Transket_pyr 403-563 aa PF02780 Transketolase_C 581-704 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787752.1`	Pfam	`PF13292`	DXP_synthase_N	Family	80	365	3.3e-109	365.1	1-deoxy-D-xylulose-5-phosphate synthase
`XP_057787752.1`	Pfam	`PF00676`	E1_dh	Domain	190	251	4.4e-05	23.3	Dehydrogenase E1 component
`XP_057787752.1`	Pfam	`PF02779`	Transket_pyr	Domain	403	563	1.1e-47	162.6	Transketolase, pyrimidine binding domain
`XP_057787752.1`	Pfam	`PF02780`	Transketolase_C	Domain	581	704	4.4e-34	117.8	Transketolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057931769.1
ATTTGGATTTTTTTTTGTATGAGAAGTCACGTCTTTGCATTAACCTCTCATGAGTTTTTGTTATAAAATGCTCCAACTATCCACCTTGTTATTTCCAGCACACACAACTTGAAACAACTCTCTCTGTCTCTCTCTCAAACATTCCCTGCCTGCTTCACTTCCCCTTGGGCCGAGAGAGAGATACACAGAGATGGCGTCGTCTTGTGGAGTTATCAACAGCAGTTTCTTGCCATTGCTCCATTCTGAGGATTCATCAAGCC...

CDS

1 records

下载 CDS FASTA

LOC131004988
ATGGCGTCGTCTTGTGGAGTTATCAACAGCAGTTTCTTGCCATTGCTCCATTCTGAGGATTCATCAAGCCTCTTATCTCGCACTACTGCTACTCTTCCCCTAAAAAAGCATAAGTTCTCCGTGGTAGCAGCTCTTCAACAGGATAACACCAACGACGTGGCTGCCAATGGAGAGAGTCTGACGAGGCAGAAAACAAGAGCTCTCAATTTCACTGGAGACAAGCCTCCAACTCCAATATTGGACACCATCAACTATCCAAA...

Protein

1 records

下载 Protein FASTA

XP_057787752.1
MASSCGVINSSFLPLLHSEDSSSLLSRTTATLPLKKHKFSVVAALQQDNTNDVAANGESLTRQKTRALNFTGDKPPTPILDTINYPNHMKNLSVEELERLADELREEIVYTVSKTGGHLSSSLGVSELTVALHHVFNTPEDKIIWDVGHQAYPHKILTGRRSRMHTIRQTFGLAGFPKRDESAHDAFGAGHSSTSISAGLGMAVGRDLLHKNNHVISVIGDGAMTAGQAYEALNNAGFLDSNLIIVLNDNKQVSLPTATI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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