当前解析结果
SmilChr01G004649| 统一新 Gene ID | SmilChr01G004649 |
|---|---|
| 名称 | SmilChr01G004649 |
| 描述 | glutamate receptor 2.8-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 64569412 - 64572379 / + |
| NCBI Gene ID | LOC131004999 |
|---|---|
| GeneID | 131004999 |
| locus_tag | - |
| NCBI Name | LOC131004999 |
| 原始查询 | SmilChr01G004649 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamate receptor 2.8-like |
| 产物 | glutamate receptor 2.8-like |
| Arabidopsis | AT2G29120 (GLR2.7)glutamate receptor 2.7 [Source:NCBI gene (formerly Entrezgene);Acc:817460] identity=36.2; qcov=1.02; evalue=4.1e-170; confidence=medium |
| Rice | Os09g0429200 (OsGLR2.2)- identity=36.8; qcov=0.983; evalue=2.1e-175; confidence=medium |
| GO | GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane); GO:0006811 (monoatomic ion transport) |
| KEGG | - |
| Pfam | PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131004999 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057787758.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057787758.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057787758.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057787758.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057787758.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:64569435 |
TG |
T |
1bp_deletion | frameshift_variant | 11 | B104,B127,B14,B60,B73,C11,C19,C48,C69,C84,C85 |
Chr1:64569437 |
TG |
T |
1bp_deletion | frameshift_variant | 11 | B104,B127,B14,B60,B73,C11,C19,C48,C69,C84,C85 |
Chr1:64570150 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr1:64570163 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C76 |
Chr1:64570295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B100,B14,C11,C76 |
Chr1:64570336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C46,D8 |
Chr1:64570740 |
G |
A |
EMS_canonical_SNV | stop_gained | 5 | B14,B25,C19,C76,C84 |
Chr1:64570740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B14,B25,C19,C76,C84 |
Chr1:64571158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr1:64571212 |
GT |
G |
1bp_deletion | frameshift_variant | 1 | B84 |
Chr1:64571212 |
GT |
G |
1bp_deletion | CDS_variant | 1 | B84 |
Chr1:64571775 |
G |
GAC |
2bp_insertion | frameshift_variant | 1 | A9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787758.1PF13458
Peripla_BP_6 32-328 aa
PF01094
ANF_receptor 49-384 aa
PF10613
Lig_chan-Glu_bd 455-543 aa
PF00497
SBP_bac_3 460-783 aa
PF00060
Lig_chan 557-816 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787758.1 |
Pfam | PF13458 |
Peripla_BP_6 | Family | 32 | 328 | 1.6e-12 | 48.4 | Periplasmic binding protein |
XP_057787758.1 |
Pfam | PF01094 |
ANF_receptor | Domain | 49 | 384 | 3.4e-58 | 198.1 | Receptor family ligand binding region |
XP_057787758.1 |
Pfam | PF10613 |
Lig_chan-Glu_bd | Domain | 455 | 543 | 5.8e-08 | 33.6 | Ligated ion channel L-glutamate- and glycine-binding site |
XP_057787758.1 |
Pfam | PF00497 |
SBP_bac_3 | Domain | 460 | 783 | 5.5e-07 | 30.1 | Bacterial extracellular solute-binding proteins, family 3 |
XP_057787758.1 |
Pfam | PF00060 |
Lig_chan | Family | 557 | 816 | 1.7e-14 | 54.6 | Ligand-gated ion channel |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。