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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr01G004660

染色体: Chr01 坐标: 64704225-64708380 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr01G004660
名称SmilChr01G004660
描述probable E3 ubiquitin-protein ligase XBOS32
染色体 / SeqIDChr01 / NC_080387.1
坐标与链方向64704225 - 64708380 / +

ID 对照

NCBI Gene IDLOC131005010
GeneID131005010
locus_tag-
NCBI NameLOC131005010
原始查询SmilChr01G004660

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述probable E3 ubiquitin-protein ligase XBOS32
产物probable E3 ubiquitin-protein ligase XBOS32
ArabidopsisAT5G57740 (XBAT32)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835882]
identity=66.7; qcov=1.03; evalue=0; confidence=high
RiceOs02g0791200 (XBOS32)
-
identity=65.3; qcov=1.01; evalue=0; confidence=high
GOGO:0005515 (protein binding)
KEGG-
PfamPF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF24921 (RING_XB3-XBAT31)
InterPro-
eggNOG-
NRGeneID:131005010

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytosol 细胞质基质 1.00000 XP_057787769.1
2 Cytoplasm 细胞质 0.80000 XP_057787769.1
3 Nucleus 细胞核 0.00000 XP_057787769.1
4 Chromosome 染色体 0.00000 XP_057787769.1
5 Centromere 着丝粒 0.00000 XP_057787769.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr1:64705671 G A EMS_canonical_SNV CDS_variant 5 B115,B20,B86,B9,C44
Chr1:64705869 C T EMS_canonical_SNV CDS_variant 3 B125,B48,D5
Chr1:64706191 G A EMS_canonical_SNV CDS_variant 3 B125,B48,D5
Chr1:64707382 C T EMS_canonical_SNV CDS_variant 3 A14,B123,C1
Chr1:64707594 G A EMS_canonical_SNV CDS_variant 2 A19,C77
Chr1:64708025 G A EMS_canonical_SNV CDS_variant 1 C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787769.1
508 aa
N
1
254
508
Ank_2
Ank_3
Ank
Ank_4
Ank_5
Ank_2
Ank_3
Ank
Ank_4
Ank_2
Ank
Ank_3
Ank
Ank_3
Ank_2
Ank
RING_XB3-XBAT31
C
PF12796 Ank_2 30-121 aa PF13606 Ank_3 61-87 aa PF00023 Ank 61-90 aa PF13637 Ank_4 64-113 aa PF13857 Ank_5 79-116 aa PF12796 Ank_2 92-148 aa PF13606 Ank_3 93-120 aa PF00023 Ank 93-123 aa PF13637 Ank_4 97-147 aa PF12796 Ank_2 122-215 aa PF00023 Ank 126-148 aa PF13606 Ank_3 126-152 aa PF00023 Ank 190-215 aa PF13606 Ank_3 190-215 aa PF12796 Ank_2 194-283 aa PF00023 Ank 233-263 aa PF24921 RING_XB3-XBAT31 330-385 aa
XP_057787770.1
502 aa
N
1
251
502
Ank_2
Ank_3
Ank
Ank_4
Ank_5
Ank_2
Ank_3
Ank
Ank_4
Ank_2
Ank
Ank_3
Ank
Ank_3
Ank_2
Ank
RING_XB3-XBAT31
C
PF12796 Ank_2 24-115 aa PF13606 Ank_3 55-81 aa PF00023 Ank 55-84 aa PF13637 Ank_4 58-107 aa PF13857 Ank_5 73-110 aa PF12796 Ank_2 78-142 aa PF13606 Ank_3 87-114 aa PF00023 Ank 87-117 aa PF13637 Ank_4 91-141 aa PF12796 Ank_2 116-209 aa PF00023 Ank 120-142 aa PF13606 Ank_3 120-146 aa PF00023 Ank 184-209 aa PF13606 Ank_3 184-209 aa PF12796 Ank_2 188-277 aa PF00023 Ank 227-257 aa PF24921 RING_XB3-XBAT31 324-379 aa
XP_057787771.1
502 aa
N
1
251
502
Ank_2
Ank_3
Ank
Ank_4
Ank_5
Ank_2
Ank_3
Ank
Ank_4
Ank_2
Ank
Ank_3
Ank
Ank_3
Ank_2
Ank
RING_XB3-XBAT31
C
PF12796 Ank_2 24-115 aa PF13606 Ank_3 55-81 aa PF00023 Ank 55-84 aa PF13637 Ank_4 58-107 aa PF13857 Ank_5 73-110 aa PF12796 Ank_2 78-142 aa PF13606 Ank_3 87-114 aa PF00023 Ank 87-117 aa PF13637 Ank_4 91-141 aa PF12796 Ank_2 116-209 aa PF00023 Ank 120-142 aa PF13606 Ank_3 120-146 aa PF00023 Ank 184-209 aa PF13606 Ank_3 184-209 aa PF12796 Ank_2 188-277 aa PF00023 Ank 227-257 aa PF24921 RING_XB3-XBAT31 324-379 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057787769.1 Pfam PF12796 Ank_2 Repeat 30 121 2.5e-49 166.5 Ankyrin repeats (3 copies)
XP_057787769.1 Pfam PF13606 Ank_3 Repeat 61 87 4.9e-30 100.6 Ankyrin repeat
XP_057787769.1 Pfam PF00023 Ank Repeat 61 90 9.5e-43 142.5 Ankyrin repeat
XP_057787769.1 Pfam PF13637 Ank_4 Repeat 64 113 1.2e-28 99.2 Ankyrin repeats (many copies)
XP_057787769.1 Pfam PF13857 Ank_5 Repeat 79 116 1.7e-26 92.7 Ankyrin repeats (many copies)
XP_057787769.1 Pfam PF12796 Ank_2 Repeat 92 148 2.5e-49 166.5 Ankyrin repeats (3 copies)
XP_057787769.1 Pfam PF13606 Ank_3 Repeat 93 120 4.9e-30 100.6 Ankyrin repeat
XP_057787769.1 Pfam PF00023 Ank Repeat 93 123 9.5e-43 142.5 Ankyrin repeat
XP_057787769.1 Pfam PF13637 Ank_4 Repeat 97 147 1.2e-28 99.2 Ankyrin repeats (many copies)
XP_057787769.1 Pfam PF12796 Ank_2 Repeat 122 215 2.5e-49 166.5 Ankyrin repeats (3 copies)
XP_057787769.1 Pfam PF00023 Ank Repeat 126 148 9.5e-43 142.5 Ankyrin repeat
XP_057787769.1 Pfam PF13606 Ank_3 Repeat 126 152 4.9e-30 100.6 Ankyrin repeat
XP_057787769.1 Pfam PF00023 Ank Repeat 190 215 9.5e-43 142.5 Ankyrin repeat
XP_057787769.1 Pfam PF13606 Ank_3 Repeat 190 215 4.9e-30 100.6 Ankyrin repeat
XP_057787769.1 Pfam PF12796 Ank_2 Repeat 194 283 2.5e-49 166.5 Ankyrin repeats (3 copies)
XP_057787769.1 Pfam PF00023 Ank Repeat 233 263 9.5e-43 142.5 Ankyrin repeat
XP_057787769.1 Pfam PF24921 RING_XB3-XBAT31 Domain 330 385 2.9e-18 66.4 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
XP_057787770.1 Pfam PF12796 Ank_2 Repeat 24 115 2e-50 170.0 Ankyrin repeats (3 copies)
XP_057787770.1 Pfam PF13606 Ank_3 Repeat 55 81 4.4e-30 100.7 Ankyrin repeat
XP_057787770.1 Pfam PF00023 Ank Repeat 55 84 8.6e-43 142.6 Ankyrin repeat
XP_057787770.1 Pfam PF13637 Ank_4 Repeat 58 107 1.1e-28 99.4 Ankyrin repeats (many copies)
XP_057787770.1 Pfam PF13857 Ank_5 Repeat 73 110 1.5e-26 92.9 Ankyrin repeats (many copies)
XP_057787770.1 Pfam PF12796 Ank_2 Repeat 78 142 2e-50 170.0 Ankyrin repeats (3 copies)
XP_057787770.1 Pfam PF13606 Ank_3 Repeat 87 114 4.4e-30 100.7 Ankyrin repeat
XP_057787770.1 Pfam PF00023 Ank Repeat 87 117 8.6e-43 142.6 Ankyrin repeat
XP_057787770.1 Pfam PF13637 Ank_4 Repeat 91 141 1.1e-28 99.4 Ankyrin repeats (many copies)
XP_057787770.1 Pfam PF12796 Ank_2 Repeat 116 209 2e-50 170.0 Ankyrin repeats (3 copies)
XP_057787770.1 Pfam PF00023 Ank Repeat 120 142 8.6e-43 142.6 Ankyrin repeat
XP_057787770.1 Pfam PF13606 Ank_3 Repeat 120 146 4.4e-30 100.7 Ankyrin repeat
XP_057787770.1 Pfam PF00023 Ank Repeat 184 209 8.6e-43 142.6 Ankyrin repeat
XP_057787770.1 Pfam PF13606 Ank_3 Repeat 184 209 4.4e-30 100.7 Ankyrin repeat
XP_057787770.1 Pfam PF12796 Ank_2 Repeat 188 277 2e-50 170.0 Ankyrin repeats (3 copies)
XP_057787770.1 Pfam PF00023 Ank Repeat 227 257 8.6e-43 142.6 Ankyrin repeat
XP_057787770.1 Pfam PF24921 RING_XB3-XBAT31 Domain 324 379 2.8e-18 66.4 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
XP_057787771.1 Pfam PF12796 Ank_2 Repeat 24 115 2e-50 170.0 Ankyrin repeats (3 copies)
XP_057787771.1 Pfam PF13606 Ank_3 Repeat 55 81 4.4e-30 100.7 Ankyrin repeat
XP_057787771.1 Pfam PF00023 Ank Repeat 55 84 8.6e-43 142.6 Ankyrin repeat
XP_057787771.1 Pfam PF13637 Ank_4 Repeat 58 107 1.1e-28 99.4 Ankyrin repeats (many copies)
XP_057787771.1 Pfam PF13857 Ank_5 Repeat 73 110 1.5e-26 92.9 Ankyrin repeats (many copies)
XP_057787771.1 Pfam PF12796 Ank_2 Repeat 78 142 2e-50 170.0 Ankyrin repeats (3 copies)
XP_057787771.1 Pfam PF13606 Ank_3 Repeat 87 114 4.4e-30 100.7 Ankyrin repeat
XP_057787771.1 Pfam PF00023 Ank Repeat 87 117 8.6e-43 142.6 Ankyrin repeat
XP_057787771.1 Pfam PF13637 Ank_4 Repeat 91 141 1.1e-28 99.4 Ankyrin repeats (many copies)
XP_057787771.1 Pfam PF12796 Ank_2 Repeat 116 209 2e-50 170.0 Ankyrin repeats (3 copies)
XP_057787771.1 Pfam PF00023 Ank Repeat 120 142 8.6e-43 142.6 Ankyrin repeat
XP_057787771.1 Pfam PF13606 Ank_3 Repeat 120 146 4.4e-30 100.7 Ankyrin repeat
XP_057787771.1 Pfam PF00023 Ank Repeat 184 209 8.6e-43 142.6 Ankyrin repeat
XP_057787771.1 Pfam PF13606 Ank_3 Repeat 184 209 4.4e-30 100.7 Ankyrin repeat
XP_057787771.1 Pfam PF12796 Ank_2 Repeat 188 277 2e-50 170.0 Ankyrin repeats (3 copies)
XP_057787771.1 Pfam PF00023 Ank Repeat 227 257 8.6e-43 142.6 Ankyrin repeat
XP_057787771.1 Pfam PF24921 RING_XB3-XBAT31 Domain 324 379 2.8e-18 66.4 E3 ubiquitin-protein ligase XB3/XBAT31 RING finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057931786.1
GAATAATAACAAGTGCCAATGATGAAGAACACACTTTCTTGTTGTTTTGAGGTTGCCGCAAAACTCGCTGTCCCCTTCTCTTTAAAGCTTAACAATTACCAAAACAAAACTGCCCAAAAATTAATCTTATTCCACCCGAATAATAAGCATTACACCTCATCCCCAAACAAAAATATTTAAGAATTTTGGAGAGAGAGGGAGAGATATTTGGGGGATGATTGTCGTTTAATACTTGTAAATTGTCGGTTAGAAATGAAGAA...
XM_057931787.1
AATGATGAAGAACACACTTTCTTGTTGTTTTGAGGTTGCCGCAAAACTCGCTGTCCCCTTCTCTTTAAAGCTTAACAATTACCAAAACAAAACTGCCCAAAAATTAATCTTATTCCACCCGAATAATAAGCATTACACCTCATCCCCAAACAAAAATATTTAAGAATTTTGGAGAGAGAGGGAGAGATATTTGGGGGATGATTGTCGTTTAATACTTGTAAATTGTCGGTTAGAAATGAAGAAGGGAGACAAATAGTTTT...

CDS

3 records

下载 CDS FASTA
LOC131005010
ATGGAGGATTCTGTATACATGGTGACAATGCGTTTCTTGAGTCTTGTTGGGAATTCTTTTGGGTGCTCTGCATCGGGGGAGCGTCTCGTCTCCGCAGCCAGAGATGGTGATCTTCAAGAAGCCAAGGCTTTGTTGGACTACAACCCTCGCCTTGCAAGGTATTCAACCTTTGGTGTTCGCAATTCCCCCTTGCATTACTCTGCAGCTCAGGGTCACCATGAGATTGTTTCACTCTTGCTAGAGTCTGGTGTTGATATTAA...
LOC131005010
ATGGTGACAATGCGTTTCTTGAGTCTTGTTGGGAATTCTTTTGGGTGCTCTGCATCGGGGGAGCGTCTCGTCTCCGCAGCCAGAGATGGTGATCTTCAAGAAGCCAAGGCTTTGTTGGACTACAACCCTCGCCTTGCAAGGTATTCAACCTTTGGTGTTCGCAATTCCCCCTTGCATTACTCTGCAGCTCAGGGTCACCATGAGATTGTTTCACTCTTGCTAGAGTCTGGTGTTGATATTAATCTCAGGAACTATAGGGG...

Protein

3 records

下载 Protein FASTA
XP_057787769.1
MEDSVYMVTMRFLSLVGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHEIVSLLLESGVDINLRNYRGQTALMQACQYGHWEVVQILILFKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSIPNFCSILRKKSKNDESVSEFDEGSLREVISRPADGGITALHMAALNGHADTVHLLLDIGASASDVTVEDGTTIDLIGAGSTPLHYAACGGNAQCCQLLIAKGASLN...
XP_057787770.1
MVTMRFLSLVGNSFGCSASGERLVSAARDGDLQEAKALLDYNPRLARYSTFGVRNSPLHYSAAQGHHEIVSLLLESGVDINLRNYRGQTALMQACQYGHWEVVQILILFKANIHRADYLNGGTALHLAALNGHSRCIRLLLADYIPSIPNFCSILRKKSKNDESVSEFDEGSLREVISRPADGGITALHMAALNGHADTVHLLLDIGASASDVTVEDGTTIDLIGAGSTPLHYAACGGNAQCCQLLIAKGASLNAENTNG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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