Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004661`

染色体: Chr01 坐标: 64718941-64721423 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004661`
名称	SmilChr01G004661
描述	GCN5-related N-acetyltransferase 7, chloroplastic
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	64718941 - 64721423 / `+`

ID 对照

NCBI Gene ID	`LOC131005013`
GeneID	`131005013`
locus_tag	`-`
NCBI Name	`LOC131005013`
原始查询	`SmilChr01G004661`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	GCN5-related N-acetyltransferase 7, chloroplastic
产物	GCN5-related N-acetyltransferase 7%2C chloroplastic
Arabidopsis	`AT4G28030` (AT4G28030) Acyl-CoA N-acyltransferases (NAT) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828918] identity=49.3; qcov=0.861; evalue=8.12e-66; confidence=high
Rice	`Os08g0260000` - identity=31.8; qcov=0.425; evalue=3.17e-09; confidence=low
GO	GO:0009507 (chloroplast); GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups)
KEGG	-
Pfam	PF00583 (Acetyltransf_1); PF08445 (FR47); PF13508 (Acetyltransf_7); PF13673 (Acetyltransf_10)
InterPro	-
eggNOG	-
NR	GeneID:131005013

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057787778.1`
2	Chloroplast stroma	叶绿体基质	0.80000	`XP_057787778.1`
3	Nucleus	细胞核	0.00000	`XP_057787778.1`
4	Chromosome	染色体	0.00000	`XP_057787778.1`
5	Centromere	着丝粒	0.00000	`XP_057787778.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:64719330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:64719777`	`CGT`	`C`	2bp_deletion	frameshift_variant	26	B102,B104,B106,B110,B12,B13,B25,B4,B52,B57,B60,B8,B83,B85,B86,C13,C23,C25,C4,C42,C46,C62,C64,C66,C76,D7
`Chr1:64719839`	`GT`	`G`	1bp_deletion	frameshift_variant	4	A10,A18,B126,C62
`Chr1:64719839`	`GT`	`G`	1bp_deletion	CDS_variant	4	A10,A18,B126,C62
`Chr1:64721177`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B83,C59
`Chr1:64721212`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B83,C59

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787778.1

304 aa

152

304

Acetyltransf_1

Acetyltransf_7

Acetyltransf_10

FR47

PF00583 Acetyltransf_1 185-272 aa PF13508 Acetyltransf_7 212-273 aa PF13673 Acetyltransf_10 213-278 aa PF08445 FR47 216-275 aa

XP_057787779.1

252 aa

126

252

Acetyltransf_1

Acetyltransf_10

Acetyltransf_7

FR47

PF00583 Acetyltransf_1 110-220 aa PF13673 Acetyltransf_10 148-226 aa PF13508 Acetyltransf_7 160-221 aa PF08445 FR47 164-223 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787778.1`	Pfam	`PF00583`	Acetyltransf_1	Family	185	272	8.5e-11	42.9	Acetyltransferase (GNAT) family
`XP_057787778.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	212	273	1.8e-06	29.0	Acetyltransferase (GNAT) domain
`XP_057787778.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	213	278	2.3e-05	25.1	Acetyltransferase (GNAT) domain
`XP_057787778.1`	Pfam	`PF08445`	FR47	Family	216	275	1.1e-05	26.0	FR47-like protein
`XP_057787779.1`	Pfam	`PF00583`	Acetyltransf_1	Family	110	220	1.5e-11	45.3	Acetyltransferase (GNAT) family
`XP_057787779.1`	Pfam	`PF13673`	Acetyltransf_10	Domain	148	226	9.5e-06	26.3	Acetyltransferase (GNAT) domain
`XP_057787779.1`	Pfam	`PF13508`	Acetyltransf_7	Domain	160	221	1.4e-06	29.3	Acetyltransferase (GNAT) domain
`XP_057787779.1`	Pfam	`PF08445`	FR47	Family	164	223	8.4e-06	26.4	FR47-like protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931795.1
AATAGTGATATTTTGAGCGACTTATCCAAAAAAGAGAAGAAAAAAACCGAAAAAAGAAAAGAAATGGACTTATTTTTCATGAATTCATTCAAATTGACGATATTGATTATACCGGAACCGGAATTGAGTGGGTGGCGGAGAAGAGAGATGTTGATCTTCTATATTCCTACCCCTCCTCCACACGCTTCCTTCGCCGCCCCTTTCAACCACGTCCACGGTGGCGCCGCCTCTCTCCCCCGCCGCCCGTCGCTCGGTCTTTA...

XM_057931796.1
AAAAAAGAAAAGAAATGGACTTATTTTTCATGAATTCATTCAAATTGACGATATTGATTATACCGGAACCGGAATTGAGTGGGTGGCGGAGAAGAGAGATGTTGATCTTCTATATTCCTACCCCTCCTCCACACGCTTCCTTCGCCGCCCCTTTCAACCACGTCCACGGTGGCGCCGCCTCTCTCCCCCGCCGCCCGTCGCTCGGTCTTTACTGCCAGCTGTCCGACCACCAAACAGCACATCAATTGGCAACTCCACCA...

CDS

2 records

下载 CDS FASTA

LOC131005013
ATGGACTTATTTTTCATGAATTCATTCAAATTGACGATATTGATTATACCGGAACCGGAATTGAGTGGGTGGCGGAGAAGAGAGATGTTGATCTTCTATATTCCTACCCCTCCTCCACACGCTTCCTTCGCCGCCCCTTTCAACCACGTCCACGGTGGCGCCGCCTCTCTCCCCCGCCGCCCGTCGCTCGGTCTTTACTGCCAGCTGTCCGACCACCAAACAGCACATCAATTGGCAACTCCACCAGTTACGATCAATAG...

Protein

2 records

下载 Protein FASTA

XP_057787778.1
MDLFFMNSFKLTILIIPEPELSGWRRREMLIFYIPTPPPHASFAAPFNHVHGGAASLPRRPSLGLYCQLSDHQTAHQLATPPVTINRSLLSVSATCSEAELLAATRLRVRTFYDFNEQTFGIEDHKRYLVEREFEALSERVAGKRKGFRKVSCINATLPMSWLMRVSKDLCAACKFSQNGEDRVVVGTLDLNQCVGLPDELVGMKPQGIGSDFARAYISNVCVAEELHRNGLGYELIAESKRVAQDWGISDLYVHVAVNN...

XP_057787779.1
MDLFFMNSFKLTILIIPEPELSGWRRREMLIFYIPTPPPHASFAAPFNHVHGGAASLPRRPSLGLYCQLSDHQTAHQLATPPVTINRSLLSVSATCSEAELLAATRLRVRTFYDFNEQTFGIEFSQNGEDRVVVGTLDLNQCVGLPDELVGMKPQGIGSDFARAYISNVCVAEELHRNGLGYELIAESKRVAQDWGISDLYVHVAVNNEAAKNLYLKSGFTVESDEPAWQARFLDRPRRLLLWTGLPITYQL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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