Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004678`

染色体: Chr01 坐标: 64867873-64871869 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004678`
名称	SmilChr01G004678
描述	probable LRR receptor-like serine/threonine-protein kinase At2g23950
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	64867873 - 64871869 / `-`

ID 对照

NCBI Gene ID	`LOC131005029`
GeneID	`131005029`
locus_tag	`-`
NCBI Name	`LOC131005029`
原始查询	`SmilChr01G004678`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable LRR receptor-like serine/threonine-protein kinase At2g23950
产物	probable LRR receptor-like serine/threonine-protein kinase At2g23950
Arabidopsis	`AT2G23950` (AT2G23950) Leucine-rich repeat protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:816928] identity=62.8; qcov=1.08; evalue=0; confidence=high
Rice	`Os08g0442700` (COE1) - identity=53.8; qcov=1.12; evalue=0; confidence=high
GO	GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation)
KEGG	-
Pfam	PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF08263 (LRRNT_2); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131005029

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057787803.1`
2	Nucleus	细胞核	0.00000	`XP_057787803.1`
3	Chromosome	染色体	0.00000	`XP_057787803.1`
4	Centromere	着丝粒	0.00000	`XP_057787803.1`
5	Chromatin	染色质	0.00000	`XP_057787803.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:64868758`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr1:64868822`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr1:64868881`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787803.1

637 aa

318

637

LRRNT_2

LRR_1

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 34-73 aa PF00560 LRR_1 101-123 aa PF13855 LRR_8 124-184 aa PF00560 LRR_1 125-145 aa PF00560 LRR_1 173-188 aa PF00069 Pkinase 304-564 aa PF07714 PK_Tyr_Ser-Thr 306-572 aa

XP_057787804.1

636 aa

318

636

LRRNT_2

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 34-73 aa PF13855 LRR_8 97-136 aa PF00560 LRR_1 101-123 aa PF00560 LRR_1 125-145 aa PF00560 LRR_1 172-187 aa PF00069 Pkinase 303-563 aa PF07714 PK_Tyr_Ser-Thr 305-571 aa

XP_057787805.1

593 aa

296

593

LRRNT_2

LRR_8

LRR_1

Pkinase

PK_Tyr_Ser-Thr

PF08263 LRRNT_2 34-73 aa PF13855 LRR_8 100-156 aa PF00560 LRR_1 101-123 aa PF00560 LRR_1 125-145 aa PF00069 Pkinase 260-521 aa PF07714 PK_Tyr_Ser-Thr 262-528 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787803.1`	Pfam	`PF08263`	LRRNT_2	Family	34	73	1.3e-14	54.9	Leucine rich repeat N-terminal domain
`XP_057787803.1`	Pfam	`PF00560`	LRR_1	Repeat	101	123	1e-11	43.2	Leucine Rich Repeat
`XP_057787803.1`	Pfam	`PF13855`	LRR_8	Repeat	124	184	7.8e-11	42.3	Leucine rich repeat
`XP_057787803.1`	Pfam	`PF00560`	LRR_1	Repeat	125	145	1e-11	43.2	Leucine Rich Repeat
`XP_057787803.1`	Pfam	`PF00560`	LRR_1	Repeat	173	188	1e-11	43.2	Leucine Rich Repeat
`XP_057787803.1`	Pfam	`PF00069`	Pkinase	Domain	304	564	9.8e-39	134.0	Protein kinase domain
`XP_057787803.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	306	572	1.2e-42	146.8	Protein tyrosine and serine/threonine kinase
`XP_057787804.1`	Pfam	`PF08263`	LRRNT_2	Family	34	73	1.3e-14	54.9	Leucine rich repeat N-terminal domain
`XP_057787804.1`	Pfam	`PF13855`	LRR_8	Repeat	97	136	2.6e-08	34.2	Leucine rich repeat
`XP_057787804.1`	Pfam	`PF00560`	LRR_1	Repeat	101	123	1.1e-09	37.1	Leucine Rich Repeat
`XP_057787804.1`	Pfam	`PF00560`	LRR_1	Repeat	125	145	1.1e-09	37.1	Leucine Rich Repeat
`XP_057787804.1`	Pfam	`PF00560`	LRR_1	Repeat	172	187	1.1e-09	37.1	Leucine Rich Repeat
`XP_057787804.1`	Pfam	`PF00069`	Pkinase	Domain	303	563	9.8e-39	134.0	Protein kinase domain
`XP_057787804.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	305	571	1.2e-42	146.8	Protein tyrosine and serine/threonine kinase
`XP_057787805.1`	Pfam	`PF08263`	LRRNT_2	Family	34	73	1.2e-14	55.0	Leucine rich repeat N-terminal domain
`XP_057787805.1`	Pfam	`PF13855`	LRR_8	Repeat	100	156	1.3e-07	32.0	Leucine rich repeat
`XP_057787805.1`	Pfam	`PF00560`	LRR_1	Repeat	101	123	4.6e-08	32.4	Leucine Rich Repeat
`XP_057787805.1`	Pfam	`PF00560`	LRR_1	Repeat	125	145	4.6e-08	32.4	Leucine Rich Repeat
`XP_057787805.1`	Pfam	`PF00069`	Pkinase	Domain	260	521	8.3e-39	134.3	Protein kinase domain
`XP_057787805.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	262	528	9.9e-43	147.0	Protein tyrosine and serine/threonine kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057931820.1
CATTCAAAAGAAAGGAGCTGGAGAAATAAAAAGATAAAGTGGTCTAAAAATACTCAATAAAGAGGGTGTTCAACACAGTAAAAGATGGTGCCTTTGTAAAAAGCTTCTTTTTTTTAGAGAGAGAGAGGGGGGACGTGCAGCAGGACTCACTACATACATACACGATGTTTGTGAATCAAATGTAGTGGTTTTGTTTCTTTCTCCCATGTTTTGCCAATGATCATAATAATGTCTCTCATTCCTAGCCACTGCCTCCTTCT...

XM_057931821.1
AAAGAAAGGAGCTGGAGAAATAAAAAGATAAAGTGGTCTAAAAATACTCAATAAAGAGGGTGTTCAACACAGTAAAAGATGGTGCCTTTGTAAAAAGCTTCTTTTTTTTAGAGAGAGAGAGGGGGGACGTGCAGCAGGACTCACTACATACATACACGATGTTTGTGAATCAAATGTAGTGGTTTTGTTTCTTTCTCCCATGTTTTGCCAATGATCATAATAATGTCTCTCATTCCTAGCCACTGCCTCCTTCTTCTCCT...

CDS

3 records

下载 CDS FASTA

LOC131005029
ATGATCATAATAATGTCTCTCATTCCTAGCCACTGCCTCCTTCTTCTCCTCTTCTCTCTTCCATTTTTCTTCACTGTTACTGTTTCTTTTGAGCCTCGCAATCAAGAAGTTGAAGCTCTAACTGCTGTAAGAGAAGGGCTGACTGATCCTCATGGAGCTCTCAGCAATTGGGATGAGAACTCTGTGGACCCTTGTAGCTGGTCTATGATAACTTGCAATTCTGATAATCTTGTTACTGCCTTTGGAGCTCCTAGTCAAGG...

Protein

3 records

下载 Protein FASTA

XP_057787803.1
MIIIMSLIPSHCLLLLLFSLPFFFTVTVSFEPRNQEVEALTAVREGLTDPHGALSNWDENSVDPCSWSMITCNSDNLVTAFGAPSQGLSGSLSWMISNLTNLKQIMLQNNNISGHIPKEIGYLPNLQTLDLSNNKLSGHIPESLGLLNHLQYIRLNNNTLSGPVPLPLASLPRLTFLDLSFNNLSGPVSTFPTKTFNILGNPLICGSHSSGKCSESLLASPLSFDVDPSSGRAKTKKFAIALGVSLTFVSILVLVLGFLF...

XP_057787804.1
MIIIMSLIPSHCLLLLLFSLPFFFTVTVSFEPRNQEVEALTAVREGLTDPHGALSNWDENSVDPCSWSMITCNSDNLVTAFGAPSQGLSGSLSWMISNLTNLKQIMLQNNNISGHIPKEIGYLPNLQTLDLSNNKLSGHIPESLGLLNHLQYMLNNNTLSGPVPLPLASLPRLTFLDLSFNNLSGPVSTFPTKTFNILGNPLICGSHSSGKCSESLLASPLSFDVDPSSGRAKTKKFAIALGVSLTFVSILVLVLGFLFH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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