当前解析结果
SmilChr01G004690| 统一新 Gene ID | SmilChr01G004690 |
|---|---|
| 名称 | SmilChr01G004690 |
| 描述 | protein REDUCED CHLOROPLAST COVERAGE 2 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 64934331 - 64953792 / - |
| NCBI Gene ID | LOC131005035 |
|---|---|
| GeneID | 131005035 |
| locus_tag | - |
| NCBI Name | LOC131005035 |
| 原始查询 | SmilChr01G004690 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein REDUCED CHLOROPLAST COVERAGE 2 |
| 产物 | protein REDUCED CHLOROPLAST COVERAGE 2 |
| Arabidopsis | AT4G28080 (AT4G28080)Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:828923] identity=60.2; qcov=1.02; evalue=0; confidence=high |
| Rice | Os04g0645100 (FLO2)- identity=53.2; qcov=0.78; evalue=0; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005737 (cytoplasm); GO:0006996 (organelle organization) |
| KEGG | - |
| Pfam | PF12807 (eIF3_p135); PF13374 (TPR_10); PF13424 (TPR_12); PF15044 (CLU_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005035 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 0.40000 | XP_057787810.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057787810.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057787810.1 |
| 4 | Chloroplast | 叶绿体 | 0.20000 | XP_057787810.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057787810.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:64935199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D5 |
Chr1:64935306 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
Chr1:64935888 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,B50 |
Chr1:64935936 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B56 |
Chr1:64936233 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B55 |
Chr1:64936494 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B23,B50 |
Chr1:64937639 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B46,B64 |
Chr1:64938099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B114,C38,C75 |
Chr1:64939469 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr1:64940266 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C85 |
Chr1:64940282 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A23 |
Chr1:64940635 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A15,B131 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787810.1PF15044
CLU_N 48-118 aa
PF12807
eIF3_p135 721-864 aa
PF13374
TPR_10 934-975 aa
PF13424
TPR_12 934-1004 aa
PF13374
TPR_10 1018-1058 aa
PF13424
TPR_12 1018-1092 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787810.1 |
Pfam | PF15044 |
CLU_N | Family | 48 | 118 | 5.6e-13 | 49.8 | Mitochondrial function, CLU-N-term |
XP_057787810.1 |
Pfam | PF12807 |
eIF3_p135 | Family | 721 | 864 | 4.4e-24 | 86.2 | Translation initiation factor eIF3 subunit 135 |
XP_057787810.1 |
Pfam | PF13374 |
TPR_10 | Repeat | 934 | 975 | 5.6e-25 | 87.3 | Tetratricopeptide repeat |
XP_057787810.1 |
Pfam | PF13424 |
TPR_12 | Repeat | 934 | 1004 | 2.9e-26 | 92.2 | Tetratricopeptide repeat |
XP_057787810.1 |
Pfam | PF13374 |
TPR_10 | Repeat | 1018 | 1058 | 5.6e-25 | 87.3 | Tetratricopeptide repeat |
XP_057787810.1 |
Pfam | PF13424 |
TPR_12 | Repeat | 1018 | 1092 | 2.9e-26 | 92.2 | Tetratricopeptide repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。