Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004697`

染色体: Chr01 坐标: 65070636-65072474 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004697`
名称	SmilChr01G004697
描述	shikimate O-hydroxycinnamoyltransferase-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65070636 - 65072474 / `-`

ID 对照

NCBI Gene ID	`LOC131005046`
GeneID	`131005046`
locus_tag	`-`
NCBI Name	`LOC131005046`
原始查询	`SmilChr01G004697`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	shikimate O-hydroxycinnamoyltransferase-like
产物	shikimate O-hydroxycinnamoyltransferase-like
Arabidopsis	`AT5G48930` (HCT) hydroxycinnamoyl-CoA shikimate/quinate hydroxycinnamoyl transferase [Source:NCBI gene (formerly Entrezgene);Acc:834951] identity=53.3; qcov=1.02; evalue=5.77e-168; confidence=high
Rice	`Os04g0500700` (OsHCT1) hydroxycinnamoyltransferase 1-like [Source:NCBI gene (formerly Entrezgene);Acc:4336306] identity=46.1; qcov=1.04; evalue=3.34e-137; confidence=high
GO	GO:0016747 (acyltransferase activity, transferring groups other than amino-acyl groups)
KEGG	smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00941 (Flavonoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02458 (Transferase)
InterPro	-
eggNOG	-
NR	GeneID:131005046

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057787824.1`
2	Cytoplasm	细胞质	0.80000	`XP_057787824.1`
3	Nucleus	细胞核	0.00000	`XP_057787824.1`
4	Chromosome	染色体	0.00000	`XP_057787824.1`
5	Centromere	着丝粒	0.00000	`XP_057787824.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:65070926`	`A`	`ACG`	2bp_insertion	frameshift_variant	1	C38
`Chr1:65070926`	`A`	`ACG`	2bp_insertion	CDS_variant	1	C38
`Chr1:65070930`	`CCT`	`C`	2bp_deletion	frameshift_variant	1	C38
`Chr1:65070930`	`CCT`	`C`	2bp_deletion	CDS_variant	1	C38
`Chr1:65070958`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,C38
`Chr1:65070963`	`CGA`	`C`	2bp_deletion	frameshift_variant	1	C38
`Chr1:65070963`	`CGA`	`C`	2bp_deletion	CDS_variant	1	C38
`Chr1:65070970`	`CAA`	`C`	2bp_deletion	frameshift_variant	1	C38
`Chr1:65070970`	`CAA`	`C`	2bp_deletion	CDS_variant	1	C38
`Chr1:65071002`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr1:65071004`	`A`	`ATT`	2bp_insertion	stop_gained,frameshift_variant	1	C38
`Chr1:65071004`	`A`	`ATT`	2bp_insertion	CDS_variant	1	C38

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787824.1

428 aa

214

428

Transferase

PF02458 Transferase 1-426 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787824.1`	Pfam	`PF02458`	Transferase	Family	1	426	2.9e-106	356.5	Transferase family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057931841.1
GTAAATAAGGTGCATATTAATTAATTTACAAAAACAGACCCAACAACATGCAGATTTTTATTATAAATAGAAAGGGAAACACACACACGACTTGAAGAAAAACACAGAAGCAGCAAACAATGAAGATCAGGGTGAAGGAGTCGGCGGTGGTGAAACCAACGCCAGCGAAGCCGAGGACGACGATATGGATCTCTAATCTGGACGCCATTTTGCCGGAGAATTACCACACTCGTACTCACACCTTCTACCGCCCAACCCAC...

CDS

1 records

下载 CDS FASTA

LOC131005046
ATGAAGATCAGGGTGAAGGAGTCGGCGGTGGTGAAACCAACGCCAGCGAAGCCGAGGACGACGATATGGATCTCTAATCTGGACGCCATTTTGCCGGAGAATTACCACACTCGTACTCACACCTTCTACCGCCCAACCCACGCCGCCGACTTCTTTGACACGGCGGTGCTCAAGGCCGCGCTCGCACGGACCCTCTCCGAGTTCTACCCTATGGCGGGGAGGCTGAAAAAGGATGAGAAAGGCCGCATCGAAATCAACTG...

Protein

1 records

下载 Protein FASTA

XP_057787824.1
MKIRVKESAVVKPTPAKPRTTIWISNLDAILPENYHTRTHTFYRPTHAADFFDTAVLKAALARTLSEFYPMAGRLKKDEKGRIEINCNGEGAAFIEAEADGEIDDLGDFAPTPDICLTPKVDYAQGISSFPLFLVQVTRFKCGGVCLGLAMDHQVKDGLSALHIITTWCDIARGLDIRLPPYMDRRVLAARDPPQPKFDHVEFHPPPPLKNPQTHSNVSETRFSVLKLTREQLNIIKASCQEDNGKGAAYTSFEALTGHV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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