Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004713`

染色体: Chr01 坐标: 65278485-65282308 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004713`
名称	SmilChr01G004713
描述	cinnamoyl-CoA reductase 1
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65278485 - 65282308 / `-`

ID 对照

NCBI Gene ID	`LOC131005060`
GeneID	`131005060`
locus_tag	`-`
NCBI Name	`LOC131005060`
原始查询	`SmilChr01G004713`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cinnamoyl-CoA reductase 1
产物	cinnamoyl-CoA reductase 1
Arabidopsis	`AT1G15950` (CCR1) cinnamoyl coa reductase 1 [Source:NCBI gene (formerly Entrezgene);Acc:838165] identity=82.1; qcov=0.943; evalue=0; confidence=high
Rice	`Os08g0441500` (OsCCR) - identity=73.8; qcov=0.976; evalue=0; confidence=high
GO	GO:0016616 (oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor)
KEGG	smil00940 (Phenylpropanoid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF01073 (3Beta_HSD); PF01370 (Epimerase); PF02719 (Polysacc_synt_2); PF05368 (NmrA); PF07993 (NAD_binding_4); PF08659 (KR); PF13460 (NAD_binding_10); PF16363 (GDP_Man_Dehyd)
InterPro	-
eggNOG	-
NR	GeneID:131005060

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057787837.1`
2	Cytoplasm	细胞质	0.60000	`XP_057787837.1`
3	Nucleus	细胞核	0.00000	`XP_057787837.1`
4	Chromosome	染色体	0.00000	`XP_057787837.1`
5	Centromere	着丝粒	0.00000	`XP_057787837.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:65280027`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr1:65280813`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B129

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787837.1

332 aa

166

332

NmrA

Polysacc_synt_2

Epimerase

NAD_binding_4

3Beta_HSD

GDP_Man_Dehyd

NAD_binding_10

PF05368 NmrA 7-122 aa PF02719 Polysacc_synt_2 9-123 aa PF01370 Epimerase 9-241 aa PF08659 KR 10-129 aa PF07993 NAD_binding_4 11-193 aa PF01073 3Beta_HSD 11-233 aa PF16363 GDP_Man_Dehyd 11-245 aa PF13460 NAD_binding_10 13-128 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787837.1`	Pfam	`PF05368`	NmrA	Family	7	122	6.9e-12	46.3	NmrA-like family
`XP_057787837.1`	Pfam	`PF02719`	Polysacc_synt_2	Family	9	123	2.9e-06	27.4	Polysaccharide biosynthesis protein
`XP_057787837.1`	Pfam	`PF01370`	Epimerase	Family	9	241	3.8e-27	95.9	NAD dependent epimerase/dehydratase family
`XP_057787837.1`	Pfam	`PF08659`	KR	Family	10	129	6.9e-06	26.8	KR domain
`XP_057787837.1`	Pfam	`PF07993`	NAD_binding_4	Family	11	193	6.1e-11	42.7	Male sterility protein
`XP_057787837.1`	Pfam	`PF01073`	3Beta_HSD	Family	11	233	6.1e-19	68.8	3-beta hydroxysteroid dehydrogenase/isomerase family
`XP_057787837.1`	Pfam	`PF16363`	GDP_Man_Dehyd	Domain	11	245	1.3e-11	45.3	GDP-mannose 4,6 dehydratase
`XP_057787837.1`	Pfam	`PF13460`	NAD_binding_10	Domain	13	128	1.7e-17	64.6	NAD(P)H-binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057931854.1
TGGAATAACTAAATTTAAATAGACAAATTTAGAGGACATTAAAAAATAGGAAAATAAAAATAAAAAAGATTCTGTTTCCTCAGTCGTTGTGGATTCTGTTTTACTTCCGAGAGCTTACTCCTAAATTCCAAAATAAAATTTCTAATTTCCATTTCTTTTAATAGCGTGGTAGGTAAAGTGACAATATTTATTTTTCTTTTATAAATACCATGCTCTCACACAAGTTTTTCAATCAAGTCCCTTCCCTCTCTCCCTCTCTC...

CDS

1 records

下载 CDS FASTA

LOC131005060
ATGCCATCGGTCCCCGGGAAACTCGTCTGCGTCACCGGCGCCGGAGGCTTCATTGCTTCGTGGCTAGTTAAACTCCTCCTCGAGAAAGGCTATACAGTGAGAGGAACCGTCAGAAATCCAGATGATCCAAAGAATTCACATTTGAGAGAGCTCGAAGGAGCGGATGAGAGGCTGATTCTGTGCAGAGCTGATCTCAACGTTTATGAGAGTTTGCGCGAGGCCATTAATGGTTGCGACGGCGTCTTCCACACGGCGTCGCC...

Protein

1 records

下载 Protein FASTA

XP_057787837.1
MPSVPGKLVCVTGAGGFIASWLVKLLLEKGYTVRGTVRNPDDPKNSHLRELEGADERLILCRADLNVYESLREAINGCDGVFHTASPVTDDPEQMVEPAVNGAKNVIRAAAEAKVRRVVITSSIGAIYMDPNRDPEQVVDETCWSDLEFCKNTKNWYCYGKAVAEQAAWDEARELGVDLVVLNPVLVLGPLLQPTVNASVLHILKYLTGSAKTYANSIQAYVHVKDVALAHILLYENPAATGRYLCAESVLHRADVVEIL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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