当前解析结果
SmilChr01G004720| 统一新 Gene ID | SmilChr01G004720 |
|---|---|
| 名称 | SmilChr01G004720 |
| 描述 | factor of DNA methylation 5-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65399256 - 65404052 / - |
| NCBI Gene ID | LOC131005065 |
|---|---|
| GeneID | 131005065 |
| locus_tag | - |
| NCBI Name | LOC131005065 |
| 原始查询 | SmilChr01G004720 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | factor of DNA methylation 5-like |
| 产物 | factor of DNA methylation 5-like |
| Arabidopsis | AT1G15910 (FDM1)XH/XS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838161] identity=42.9; qcov=0.227; evalue=1.21e-29; confidence=weak |
| Rice | Os02g0293300 (OsFDML1)- identity=38.1; qcov=0.231; evalue=7.6e-28; confidence=weak |
| GO | GO:0080188 (gene silencing by siRNA-directed DNA methylation) |
| KEGG | - |
| Pfam | PF02042 (RWP-RK); PF03469 (XH); PF03470 (zf-XS) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005065 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057787842.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057787842.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057787842.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057787842.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057787842.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65399910 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C50 |
Chr1:65399913 |
ATT |
A |
2bp_deletion | frameshift_variant | 2 | B40,C62 |
Chr1:65399913 |
ATT |
A |
2bp_deletion | CDS_variant | 2 | B40,C62 |
Chr1:65400167 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A11,C41,C76,D10 |
Chr1:65401368 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | C18 |
Chr1:65401368 |
AC |
A |
1bp_deletion | CDS_variant | 1 | C18 |
Chr1:65401372 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C34 |
Chr1:65401372 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C34 |
Chr1:65401373 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B83 |
Chr1:65403160 |
CGG |
C |
2bp_deletion | frameshift_variant | 16 | A24,B123,B131,B20,B24,B4,B49,B76,B80,B9,C29,C31,C35,C63,C70,C82 |
Chr1:65403163 |
A |
ATG |
2bp_insertion | frameshift_variant | 16 | A24,B123,B131,B20,B24,B4,B49,B76,B80,B9,C29,C31,C35,C63,C70,C82 |
Chr1:65403199 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A8,B130,B137,B140,C5 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787842.1PF03469
XH 180-291 aa
PF03470
zf-XS 351-389 aa
PF03469
XH 499-623 aa
PF02042
RWP-RK 659-718 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787842.1 |
Pfam | PF03469 |
XH | Domain | 180 | 291 | 3.5e-55 | 186.2 | XH domain |
XP_057787842.1 |
Pfam | PF03470 |
zf-XS | Domain | 351 | 389 | 1e-09 | 39.2 | XS zinc finger domain |
XP_057787842.1 |
Pfam | PF03469 |
XH | Domain | 499 | 623 | 3.5e-55 | 186.2 | XH domain |
XP_057787842.1 |
Pfam | PF02042 |
RWP-RK | Domain | 659 | 718 | 6.9e-15 | 55.6 | RWP-RK domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。