Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004724`

染色体: Chr01 坐标: 65426068-65429881 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004724`
名称	SmilChr01G004724
描述	factor of DNA methylation 5-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65426068 - 65429881 / `-`

ID 对照

NCBI Gene ID	`LOC131005068`
GeneID	`131005068`
locus_tag	`-`
NCBI Name	`LOC131005068`
原始查询	`SmilChr01G004724`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	factor of DNA methylation 5-like
产物	factor of DNA methylation 5-like
Arabidopsis	`AT5G66990` (RKD3) RWP-RK domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:836834] identity=65.5; qcov=0.106; evalue=1.87e-17; confidence=weak
Rice	`Os06g0228950` - identity=53.7; qcov=0.157; evalue=8.91e-20; confidence=weak
GO	GO:0080188 (gene silencing by siRNA-directed DNA methylation)
KEGG	-
Pfam	PF02042 (RWP-RK); PF03469 (XH); PF03470 (zf-XS)
InterPro	-
eggNOG	-
NR	GeneID:131005068

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057787845.1`
2	Cytoplasm	细胞质	0.20000	`XP_057787845.1`
3	Chromosome	染色体	0.00000	`XP_057787845.1`
4	Centromere	着丝粒	0.00000	`XP_057787845.1`
5	Chromatin	染色质	0.00000	`XP_057787845.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:65426547`	`C`	`CA`	1bp_insertion	frameshift_variant	14	A19,A4,B102,B124,B21,B42,B43,B44,B66,B8,C52,C55,C6,C86
`Chr1:65426728`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B86
`Chr1:65426947`	`CA`	`C`	1bp_deletion	frameshift_variant	24	A9,B11,B118,B122,B127,B129,B13,B46,B57,B60,B65,B69,B73,B76,B77,B79,B98,C28,C31,C48,C54,C80,C86,D11
`Chr1:65427407`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B23
`Chr1:65427848`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C53
`Chr1:65427848`	`GA`	`G`	1bp_deletion	CDS_variant	1	C53
`Chr1:65428810`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B91,C57,D7
`Chr1:65428820`	`TA`	`T`	1bp_deletion	frameshift_variant	149	A1,A10,A11,A14,A18,A19,A20,A21,A22,A25,A3,A4,A5,A6,A7,A9,B1,B10,B100,B102,B103,B104,B105,B107,B108,B109,B110,B111,B112,B114,B118,B119,B121,B122,B123,B124,B125,B126,B129,B13,B131,B134,B136,B137,B14,B140,B15,B16,B18,B2,B21,B23,B24,B25,B28,B3,B31,B33,B34,B37,B38,B39,B40,B42,B43,B44,B47,B49,B50,B51,B52,B55,B57,B59,B60,B63,B64,B66,B68,B7,B70,B72,B76,B78,B79,B8,B80,B82,B83,B85,B86,B87,B90,B91,B92,B95,B97,B98,B99,C1,C13,C15,C16,C17,C18,C21,C23,C27,C29,C33,C35,C36,C38,C4,C41,C42,C43,C45,C47,C49,C5,C50,C52,C55,C58,C59,C6,C61,C62,C63,C64,C65,C66,C67,C70,C74,C75,C76,C77,C79,C83,C86,C87,D10,D11,D2,D3,D4,D9
`Chr1:65428825`	`A`	`AT`	1bp_insertion	frameshift_variant	149	A1,A10,A11,A14,A18,A19,A20,A21,A22,A25,A3,A4,A5,A6,A7,A9,B1,B10,B100,B102,B103,B104,B105,B107,B108,B109,B110,B111,B112,B114,B118,B119,B121,B122,B123,B124,B125,B126,B129,B13,B131,B134,B136,B137,B14,B140,B15,B16,B18,B2,B21,B23,B24,B25,B28,B3,B31,B33,B34,B37,B38,B39,B40,B42,B43,B44,B47,B49,B50,B51,B52,B55,B57,B59,B60,B63,B64,B66,B68,B7,B70,B72,B76,B78,B79,B8,B80,B82,B83,B85,B86,B87,B90,B91,B92,B95,B97,B98,B99,C1,C13,C15,C16,C17,C18,C21,C23,C27,C29,C33,C35,C36,C38,C4,C41,C42,C43,C45,C47,C49,C5,C50,C52,C55,C58,C59,C6,C61,C62,C63,C64,C65,C66,C67,C70,C74,C75,C76,C77,C79,C83,C86,C87,D10,D11,D2,D3,D4,D9
`Chr1:65428864`	`GT`	`G`	1bp_deletion	frameshift_variant	1	D10
`Chr1:65428864`	`GT`	`G`	1bp_deletion	CDS_variant	1	D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787845.1

594 aa

297

594

zf-XS

RWP-RK

PF03470 zf-XS 55-95 aa PF03469 XH 203-331 aa PF03470 zf-XS 381-420 aa PF02042 RWP-RK 496-564 aa

XP_057787846.1

594 aa

297

594

zf-XS

RWP-RK

PF03470 zf-XS 55-95 aa PF03469 XH 203-331 aa PF03470 zf-XS 381-420 aa PF02042 RWP-RK 496-564 aa

XP_057787847.1

590 aa

295

590

zf-XS

RWP-RK

PF03470 zf-XS 55-95 aa PF03469 XH 203-330 aa PF03470 zf-XS 398-437 aa PF02042 RWP-RK 492-560 aa

XP_057787848.1

573 aa

286

573

zf-XS

RWP-RK

PF03470 zf-XS 55-95 aa PF03469 XH 203-331 aa PF03470 zf-XS 381-420 aa PF02042 RWP-RK 475-543 aa

XP_057787849.1

573 aa

286

573

zf-XS

RWP-RK

PF03470 zf-XS 55-95 aa PF03469 XH 203-331 aa PF03470 zf-XS 381-420 aa PF02042 RWP-RK 475-543 aa

XP_057787850.1

521 aa

260

521

zf-XS

RWP-RK

PF03470 zf-XS 55-95 aa PF03469 XH 187-258 aa PF03470 zf-XS 308-347 aa PF02042 RWP-RK 423-491 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787845.1`	Pfam	`PF03470`	zf-XS	Domain	55	95	4.5e-17	62.8	XS zinc finger domain
`XP_057787845.1`	Pfam	`PF03469`	XH	Domain	203	331	1.3e-43	148.8	XH domain
`XP_057787845.1`	Pfam	`PF03470`	zf-XS	Domain	381	420	4.5e-17	62.8	XS zinc finger domain
`XP_057787845.1`	Pfam	`PF02042`	RWP-RK	Domain	496	564	3.4e-22	79.1	RWP-RK domain
`XP_057787846.1`	Pfam	`PF03470`	zf-XS	Domain	55	95	4.5e-17	62.8	XS zinc finger domain
`XP_057787846.1`	Pfam	`PF03469`	XH	Domain	203	331	1.3e-43	148.8	XH domain
`XP_057787846.1`	Pfam	`PF03470`	zf-XS	Domain	381	420	4.5e-17	62.8	XS zinc finger domain
`XP_057787846.1`	Pfam	`PF02042`	RWP-RK	Domain	496	564	3.4e-22	79.1	RWP-RK domain
`XP_057787847.1`	Pfam	`PF03470`	zf-XS	Domain	55	95	4.4e-17	62.8	XS zinc finger domain
`XP_057787847.1`	Pfam	`PF03469`	XH	Domain	203	330	2e-43	148.2	XH domain
`XP_057787847.1`	Pfam	`PF03470`	zf-XS	Domain	398	437	4.4e-17	62.8	XS zinc finger domain
`XP_057787847.1`	Pfam	`PF02042`	RWP-RK	Domain	492	560	3.4e-22	79.1	RWP-RK domain
`XP_057787848.1`	Pfam	`PF03470`	zf-XS	Domain	55	95	4e-17	62.9	XS zinc finger domain
`XP_057787848.1`	Pfam	`PF03469`	XH	Domain	203	331	1.2e-43	149.0	XH domain
`XP_057787848.1`	Pfam	`PF03470`	zf-XS	Domain	381	420	4e-17	62.9	XS zinc finger domain
`XP_057787848.1`	Pfam	`PF02042`	RWP-RK	Domain	475	543	3.3e-22	79.1	RWP-RK domain
`XP_057787849.1`	Pfam	`PF03470`	zf-XS	Domain	55	95	4e-17	62.9	XS zinc finger domain
`XP_057787849.1`	Pfam	`PF03469`	XH	Domain	203	331	1.2e-43	149.0	XH domain
`XP_057787849.1`	Pfam	`PF03470`	zf-XS	Domain	381	420	4e-17	62.9	XS zinc finger domain
`XP_057787849.1`	Pfam	`PF02042`	RWP-RK	Domain	475	543	3.3e-22	79.1	RWP-RK domain
`XP_057787850.1`	Pfam	`PF03470`	zf-XS	Domain	55	95	2e-17	63.9	XS zinc finger domain
`XP_057787850.1`	Pfam	`PF03469`	XH	Domain	187	258	3.2e-24	86.1	XH domain
`XP_057787850.1`	Pfam	`PF03470`	zf-XS	Domain	308	347	2e-17	63.9	XS zinc finger domain
`XP_057787850.1`	Pfam	`PF02042`	RWP-RK	Domain	423	491	2.8e-22	79.3	RWP-RK domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057931867.1
GGAAATTTCCTTTTCCTTTTCCTATTTCACTTCTTCACCTCCCAATCTCTTCTTCTGTATCTTCTGCAGATCCAATTTACTCATGTTATTTAAGATTAGGGATCTGCGTATCCACTAGCTTACAAATTCCTTCGGACGCACATACGATTCCGTCGATGCGGCGGCTTCCCTTGCCCCTGGGTATATCTAAGATTCAAATGAAGAAACCAACTGAAACGTTCCAACTATGAACCAAAAAAGCTCAAGAGTTGATGTTGAGG...

XM_057931863.1
AATTTCCTTTTCCTTTTCCTATTTCACTTCTTCACCTCCCAATCTCTTCTTCTGTATCTTCTGCAGATCCAATTTACTCATGTTATTTAAGATTAGGGATCTGCGTATCCACTAGCTTACAAATTCCTTCGGACGCACATACGATTCCGTCGATGCGGCGGCTTCCCTTGCCCCTGGATTCAAATGAAGAAACCAACTGAAACGTTCCAACTATGAACCAAAAAAGCTCAAGAGTTGATGTTGAGGTCGGAAATAGTTCA...

CDS

6 records

下载 CDS FASTA

LOC131005068
ATGAACCAAAAAAGCTCAAGAGTTGATGTTGAGGTCGGAAATAGTTCAACCGACAACTTTGACGACCTCAATGACGCACAAGTTACCGATTATAAACAACTTAGTTATAAGCTTTTTCAGTATCGAACATACAAATTAAGGGGCTCCGATGGTGAGTTTGGATGCCCCTTTTGTGATGATTACAAAGATGAGCATGAATGTAAGTACACTCATCTTCTTTTACATGCTATTCGAGTGGCCGAGAGCGAGGAAAGTGGGAA...

Protein

6 records

下载 Protein FASTA

XP_057787845.1
MNQKSSRVDVEVGNSSTDNFDDLNDAQVTDYKQLSYKLFQYRTYKLRGSDGEFGCPFCDDYKDEHECKYTHLLLHAIRVAESEESGKHRANHFGMARFLAIDLGEEVKAEADRLSWSEDGKRLKRPRPDEDSTERGVDLADKVRQLEEVLNERTEELNEMTDELNDLFTRERQSNNELHGVRRELIQGLNDILKGNHVHIGIKNMGEIDPKVFISEMEKRLPPIDAEMKGVELCSLWQEKIKNSQWYPYQIIVDDNGKPK...

XP_057787846.1
MNQKSSRVDVEVGNSSTDNFDDLNDAQVTDYKQLSYKLFQYRTYKLRGSDGEFGCPFCDDYKDEHECKYTHLLLHAIRVAESEESGKHRANHFGMARFLAIDLGEEVKAEADRLSWSEDGKRLKRPRPDEDSTERGVDLADKVRQLEEVLNERTEELNEMTDELNDLFTRERQSNNELHGVRRELIQGLNDILKGNHVHIGIKNMGEIDPKVFISEMEKRLPPIDAEMKGVELCSLWQEKIKNSQWYPYQIIVDDNGKPK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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