Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004727`

染色体: Chr01 坐标: 65449517-65451861 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004727`
名称	SmilChr01G004727
描述	factor of DNA methylation 1-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65449517 - 65451861 / `-`

ID 对照

NCBI Gene ID	`LOC131005071`
GeneID	`131005071`
locus_tag	`-`
NCBI Name	`LOC131005071`
原始查询	`SmilChr01G004727`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	factor of DNA methylation 1-like
产物	factor of DNA methylation 1-like
Arabidopsis	`AT1G15910` (FDM1) XH/XS domain-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:838161] identity=39.8; qcov=0.532; evalue=1.49e-37; confidence=medium
Rice	`Os01g0126600` (OsFDML2) - identity=48.1; qcov=0.446; evalue=3.91e-40; confidence=low
GO	GO:0080188 (gene silencing by siRNA-directed DNA methylation)
KEGG	-
Pfam	PF03469 (XH); PF03470 (zf-XS)
InterPro	-
eggNOG	-
NR	GeneID:131005071

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057787852.1`
2	Cytoplasm	细胞质	0.20000	`XP_057787852.1`
3	Chromosome	染色体	0.00000	`XP_057787852.1`
4	Centromere	着丝粒	0.00000	`XP_057787852.1`
5	Chromatin	染色质	0.00000	`XP_057787852.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:65449765`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A15,B131
`Chr1:65449898`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr1:65449916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A5
`Chr1:65449932`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B25,B83,B84,C59
`Chr1:65450293`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B87,C36,C59
`Chr1:65450507`	`T`	`TCG`	2bp_insertion	frameshift_variant	6	B140,B66,B87,C36,C59,D10
`Chr1:65450646`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B51
`Chr1:65450646`	`TA`	`T`	1bp_deletion	CDS_variant	1	B51
`Chr1:65450669`	`TCA`	`T`	2bp_deletion	frameshift_variant	1	C76
`Chr1:65450669`	`TCA`	`T`	2bp_deletion	CDS_variant	1	C76
`Chr1:65451140`	`G`	`GC`	1bp_insertion	frameshift_variant	6	B122,B57,B77,C28,C31,C54
`Chr1:65451250`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787852.1

359 aa

180

359

zf-XS

PF03470 zf-XS 49-89 aa PF03469 XH 219-342 aa

XP_057787853.1

359 aa

180

359

zf-XS

PF03470 zf-XS 49-89 aa PF03469 XH 219-342 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787852.1`	Pfam	`PF03470`	zf-XS	Domain	49	89	3.2e-08	34.4	XS zinc finger domain
`XP_057787852.1`	Pfam	`PF03469`	XH	Domain	219	342	6e-40	137.0	XH domain
`XP_057787853.1`	Pfam	`PF03470`	zf-XS	Domain	49	89	3.2e-08	34.4	XS zinc finger domain
`XP_057787853.1`	Pfam	`PF03469`	XH	Domain	219	342	6e-40	137.0	XH domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931869.1
TGCAGGCATGCAGAAACACACTGCAACTTTGTTTTAAAGTCTCGATAGGCTATGATGATTATAACTGCCTCCCGCATAATGTAAATCTCTTCTTCCGCATCCACATTTCCAGCTCCACTCAAATACTCTGATCCAGAAAAATTAATAATGCAGCGAAATCGTGTGGAGATGGGAAGCAGTTTGAAGGAGCAGGACATTGGAGAGTGGGAAGTTGAGGAACACAAGGAACTGAGCTATAAGCGTTTCAAGCTTCGAGATCA...

XM_057931870.1
CTCAAATACTCTGATCCAGGTCAGAGGACGTTTATTCATTTTTATTTTTCATGCAACTCACATGCCAAAAATGTTGATCTACCGTGGTAGAAGATATTGATGTGATACATGTGAAAACGTTTTTGCAGCTGAAAAATTAATAATGCAGCGAAATCGTGTGGAGATGGGAAGCAGTTTGAAGGAGCAGGACATTGGAGAGTGGGAAGTTGAGGAACACAAGGAACTGAGCTATAAGCGTTTCAAGCTTCGAGATCACAAAG...

CDS

2 records

下载 CDS FASTA

LOC131005071
ATGCAGCGAAATCGTGTGGAGATGGGAAGCAGTTTGAAGGAGCAGGACATTGGAGAGTGGGAAGTTGAGGAACACAAGGAACTGAGCTATAAGCGTTTCAAGCTTCGAGATCACAAAGTGAGAACCTCCAATGGCGAATTCAGATGCCCCTTTTGTGCGTGTAAAGACGACGACGATTATGGGTACACTAATCTTCTTCAGCATGCTATTCGAGTGGCGGAGGGCTCCATACGTAGGGAGCAGAGGGCCAAGCACTCCGC...

Protein

2 records

下载 Protein FASTA

XP_057787852.1
MQRNRVEMGSSLKEQDIGEWEVEEHKELSYKRFKLRDHKVRTSNGEFRCPFCACKDDDDYGYTNLLQHAIRVAEGSIRREQRAKHSAMARYLAVDLANEVQAEPQQYSDEEWVRPTPTKRSRSGPAKNNSRGKAVRTPVRRQPRASVNAQKVAMAEKREKDALDEVGALEIKITEMTDQMNALITKERSSNDELQGVRTELMKGLSDIQRSSHVHIGIKKIGELDPDVFINEFVQRMPPGDIVIRGVEYCTLWQEKIKDP...

XP_057787853.1
MQRNRVEMGSSLKEQDIGEWEVEEHKELSYKRFKLRDHKVRTSNGEFRCPFCACKDDDDYGYTNLLQHAIRVAEGSIRREQRAKHSAMARYLAVDLANEVQAEPQQYSDEEWVRPTPTKRSRSGPAKNNSRGKAVRTPVRRQPRASVNAQKVAMAEKREKDALDEVGALEIKITEMTDQMNALITKERSSNDELQGVRTELMKGLSDIQRSSHVHIGIKKIGELDPDVFINEFVQRMPPGDIVIRGVEYCTLWQEKIKDP...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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