Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004734`

染色体: Chr01 坐标: 65513431-65517723 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004734`
名称	SmilChr01G004734
描述	uncharacterized SmilChr01G004734
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65513431 - 65517723 / `-`

ID 对照

NCBI Gene ID	`LOC131005085`
GeneID	`131005085`
locus_tag	`-`
NCBI Name	`LOC131005085`
原始查询	`SmilChr01G004734`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	defective in cullin neddylation protein (DUF298) [Source:NCBI gene (formerly Entrezgene);Acc:838156]; symbol=AT1G15860; hit=AT1G15860; species=arabidopsis; confidence=high
产物	defective in cullin neddylation protein (DUF298) [Source:NCBI gene (formerly Entrezgene);Acc:838156]; symbol=AT1G15860; hit=AT1G15860; species=arabidopsis; confidence=high
Arabidopsis	`AT1G15860` (AT1G15860) defective in cullin neddylation protein (DUF298) [Source:NCBI gene (formerly Entrezgene);Acc:838156] identity=73.5; qcov=0.935; evalue=1.08e-118; confidence=high
Rice	`Os08g0439150` - identity=72.7; qcov=0.509; evalue=3.37e-56; confidence=medium
GO	GO:0000151 (ubiquitin ligase complex); GO:0031624 (ubiquitin conjugating enzyme binding); GO:0032182 (ubiquitin-like protein binding); GO:0045116 (protein neddylation); GO:0051443 (positive regulation of ubiquitin-protein transferase activity); GO:0097602 (cullin family protein binding)
KEGG	-
Pfam	PF03556 (Cullin_binding)
InterPro	-
eggNOG	-
NR	GeneID:131005085

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057787874.1`
2	Nucleus	细胞核	0.40000	`XP_057787874.1`
3	Cytoskeleton	细胞骨架	0.40000	`XP_057787874.1`
4	Cytosol	细胞质基质	0.20000	`XP_057787874.1`
5	Chromosome	染色体	0.00000	`XP_057787874.1`

进入亚细胞定位查询

EMS 诱变突变

该基因暂未检索到已上线的精选 EMS CDS / LoF 突变，或 EMS 突变库仍在构建。

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787874.1

230 aa

115

230

Cullin_binding

PF03556 Cullin_binding 110-224 aa

XP_057787876.1

230 aa

115

230

Cullin_binding

PF03556 Cullin_binding 110-224 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787874.1`	Pfam	`PF03556`	Cullin_binding	Family	110	224	1.4e-26	93.9	Cullin binding
`XP_057787876.1`	Pfam	`PF03556`	Cullin_binding	Family	110	224	1.4e-26	93.9	Cullin binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931891.1
CCAAGGACGAAAATTTTAAAATTCGAATTTTCCCTTTTTCTATACAATTTCGAAATAAATAATTCAAGTGCACATACGATAATGAGATGGATAAGAGATAAGAATACAAAATATTTCTTAGTGAATCGTAATCTATCGAAATCTAATAGAGTACAATAGAAACTCCTCAACAGATGAGAGAGAAGAAGGTTTTTCTTTTGAATATAAAAAATATTATTATTATTTTTTTGTTTAATGTTTAATTTTCGCTCTCTGAAGAT...

XM_057931893.1
ATGAGATGGATAAGAGATAAGAATACAAAATATTTCTTAGTGAATCGTAATCTATCGAAATCTAATAGAGTACAATAGAAACTCCTCAACAGATGAGAGAGAAGAAGTACAAGATAATTATTGGAAAATATGCCTCGTACTTCGTCGAAAAAAGGCCCCGCGAATTCGATGGCTTCCGGCACTTCATCAACGGTGGATCTTTTTCGCGCAGCTTCCGGTAAAGCAGCTTCCAAAGAGCTGGAGCGGATTGACCAGCTCTT...

CDS

2 records

下载 CDS FASTA

LOC131005085
ATGCCTCGTACTTCGTCGAAAAAAGGCCCCGCGAATTCGATGGCTTCCGGCACTTCATCAACGGTGGATCTTTTTCGCGCAGCTTCCGGTAAAGCAGCTTCCAAAGAGCTGGAGCGGATTGACCAGCTCTTCTATAATTATTCAAACAGTTCCTCTGGTATTATTGACCCAGAAGGAATTGAGTTGCTGTGCTCGGATTTGGAAGTTGACCACACAGATGTGAGGATATTATTGCTTGCTTGGAAAATGCAAGCGGAGAA...

Protein

2 records

下载 Protein FASTA

XP_057787874.1
MPRTSSKKGPANSMASGTSSTVDLFRAASGKAASKELERIDQLFYNYSNSSSGIIDPEGIELLCSDLEVDHTDVRILLLAWKMQAEKQGYFTLDEWRTGLKALRADTIVKVKKALLDLEKEVRRSSNFIDFYAYAFRYCLTEEKQKSIDIESICLLLDLVLGSQFRPQVDALNQYLKIQIDYKVINMDQWMGIYRFCNEISFPDFSNYDPDHAWPLILDNFVEWVRSKRS

XP_057787876.1
MPRTSSKKGPANSMASGTSSTVDLFRAASGKAASKELERIDQLFYNYSNSSSGIIDPEGIELLCSDLEVDHTDVRILLLAWKMQAEKQGYFTLDEWRTGLKALRADTIVKVKKALLDLEKEVRRSSNFIDFYAYAFRYCLTEEKQKSIDIESICLLLDLVLGSQFRPQVDALNQYLKIQIDYKVINMDQWMGIYRFCNEISFPDFSNYDPDHAWPLILDNFVEWVRSKRS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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