当前解析结果
SmilChr01G004736| 统一新 Gene ID | SmilChr01G004736 |
|---|---|
| 名称 | SmilChr01G004736 |
| 描述 | plasma membrane ATPase 4-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65544951 - 65549891 / - |
| NCBI Gene ID | LOC131005079 |
|---|---|
| GeneID | 131005079 |
| locus_tag | - |
| NCBI Name | LOC131005079 |
| 原始查询 | SmilChr01G004736 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | plasma membrane ATPase 4-like |
| 产物 | plasma membrane ATPase 4-like |
| Arabidopsis | AT1G80660 (HA9)H[+]-ATPase 9 [Source:NCBI gene (formerly Entrezgene);Acc:844405] identity=84.1; qcov=0.996; evalue=0; confidence=high |
| Rice | Os04g0656100 (AHA7)- identity=83.1; qcov=0.997; evalue=0; confidence=high |
| GO | GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0008553 (P-type proton-exporting transporter activity); GO:0016887 (ATP hydrolysis activity); GO:0051453 (regulation of intracellular pH); GO:0120029 (proton export across plasma membrane) |
| KEGG | smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00122 (E1-E2_ATPase); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005079 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057787868.1 |
| 2 | Vacuole | 液泡 | 0.20000 | XP_057787868.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057787868.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057787868.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057787868.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65545574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,C80,D2 |
Chr1:65545795 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr1:65546028 |
G |
GC |
1bp_insertion | frameshift_variant | 13 | A14,B109,B135,B137,B17,B22,B30,B55,B70,B77,B9,C71,C82 |
Chr1:65546031 |
G |
GT |
1bp_insertion | frameshift_variant | 13 | A14,B109,B135,B137,B17,B22,B30,B55,B70,B77,B9,C71,C82 |
Chr1:65546036 |
ACG |
A |
2bp_deletion | frameshift_variant | 13 | A14,B109,B135,B137,B17,B22,B30,B55,B70,B77,B9,C71,C82 |
Chr1:65546044 |
GTT |
G |
2bp_deletion | frameshift_variant | 7 | B109,B137,B17,B22,B70,B77,C71 |
Chr1:65546047 |
G |
GCA |
2bp_insertion | frameshift_variant | 7 | B109,B137,B17,B22,B70,B77,C71 |
Chr1:65546056 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B109,B137,B17,B70,C71 |
Chr1:65546886 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B107,B19,C36,C67,D6 |
Chr1:65546930 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A24 |
Chr1:65547218 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr1:65547240 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B108,B94,C26,C50 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787868.1PF00690
Cation_ATPase_N 18-81 aa
PF00122
E1-E2_ATPase 131-229 aa
PF00702
Hydrolase 325-602 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787868.1 |
Pfam | PF00690 |
Cation_ATPase_N | Domain | 18 | 81 | 3.6e-18 | 65.7 | Cation transporter/ATPase, N-terminus |
XP_057787868.1 |
Pfam | PF00122 |
E1-E2_ATPase | Domain | 131 | 229 | 5e-34 | 116.9 | P-type ATPase actuator domain |
XP_057787868.1 |
Pfam | PF00702 |
Hydrolase | Domain | 325 | 602 | 2.6e-11 | 45.0 | haloacid dehalogenase-like hydrolase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。