Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004742`

染色体: Chr01 坐标: 65603892-65609820 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004742`
名称	SmilChr01G004742
描述	BRAP2 RING ZnF UBP domain-containing protein 2
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65603892 - 65609820 / `-`

ID 对照

NCBI Gene ID	`LOC131005080`
GeneID	`131005080`
locus_tag	`-`
NCBI Name	`LOC131005080`
原始查询	`SmilChr01G004742`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BRAP2 RING ZnF UBP domain-containing protein 2
产物	BRAP2 RING ZnF UBP domain-containing protein 2
Arabidopsis	`AT2G26000` (BRIZ2) zinc finger (C3HC4-type RING finger) family protein [Source:NCBI gene (formerly Entrezgene);Acc:817141] identity=61.1; qcov=0.82; evalue=0; confidence=high
Rice	`Os02g0182900` (APIP10) - identity=59.3; qcov=0.799; evalue=3.12e-170; confidence=high
GO	GO:0005737 (cytoplasm); GO:0007265 (Ras protein signal transduction); GO:0008270 (zinc ion binding); GO:0016567 (protein ubiquitination); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF02148 (zf-UBP); PF07576 (BRAP2); PF13639 (zf-RING_2)
InterPro	-
eggNOG	-
NR	GeneID:131005080

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057787869.1`
2	Nucleus	细胞核	0.80000	`XP_057787869.1`
3	Chromosome	染色体	0.00000	`XP_057787869.1`
4	Centromere	着丝粒	0.00000	`XP_057787869.1`
5	Chromatin	染色质	0.00000	`XP_057787869.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:65604330`	`CT`	`C`	1bp_deletion	frameshift_variant	6	A19,A4,B102,B42,B43,C6
`Chr1:65604354`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67
`Chr1:65604420`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr1:65604450`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B139,B59,C41,C76
`Chr1:65605527`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:65605533`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr1:65605540`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:65606402`	`C`	`T`	EMS_canonical_SNV	stop_gained	9	B131,B18,B54,B86,B92,B95,C17,C47,C69
`Chr1:65606418`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B131,B18,B86,B95,C47
`Chr1:65606434`	`AT`	`A`	1bp_deletion	frameshift_variant	10	B102,B131,B18,B54,B86,B95,C10,C17,C47,C69
`Chr1:65606465`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:65606949`	`AG`	`A`	1bp_deletion	frameshift_variant	1	B114

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787869.1

523 aa

262

523

BRAP2

zf-RING_2

zf-C3HC4

zf-UBP

PF07576 BRAP2 103-200 aa PF13639 zf-RING_2 212-253 aa PF00097 zf-C3HC4 213-252 aa PF02148 zf-UBP 264-323 aa

XP_057787870.1

523 aa

262

523

BRAP2

zf-RING_2

zf-C3HC4

zf-UBP

PF07576 BRAP2 103-200 aa PF13639 zf-RING_2 212-253 aa PF00097 zf-C3HC4 213-252 aa PF02148 zf-UBP 264-323 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787869.1`	Pfam	`PF07576`	BRAP2	Family	103	200	5.3e-35	120.3	BRCA1-associated protein 2
`XP_057787869.1`	Pfam	`PF13639`	zf-RING_2	Domain	212	253	4.5e-08	33.9	Ring finger domain
`XP_057787869.1`	Pfam	`PF00097`	zf-C3HC4	Domain	213	252	3.9e-06	27.4	Zinc finger, C3HC4 type (RING finger)
`XP_057787869.1`	Pfam	`PF02148`	zf-UBP	Domain	264	323	3.2e-23	82.4	Zn-finger in ubiquitin-hydrolases and other protein
`XP_057787870.1`	Pfam	`PF07576`	BRAP2	Family	103	200	5.3e-35	120.3	BRCA1-associated protein 2
`XP_057787870.1`	Pfam	`PF13639`	zf-RING_2	Domain	212	253	4.5e-08	33.9	Ring finger domain
`XP_057787870.1`	Pfam	`PF00097`	zf-C3HC4	Domain	213	252	3.9e-06	27.4	Zinc finger, C3HC4 type (RING finger)
`XP_057787870.1`	Pfam	`PF02148`	zf-UBP	Domain	264	323	3.2e-23	82.4	Zn-finger in ubiquitin-hydrolases and other protein

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931886.1
AATTTCTAGAAAATAAAGAAGAGAAGATCATAAGCAAAACCGTGTCGTTTGGGTGCAGAACGTCGCCGTTTTATGCACAGCACCCTCTGCTGCTGTGTTTCATCCCACATAGTAGAGGATCCGCACCCCAATCTCTTCCAGCTCCGGCGAAATACACGCGCAAAGCACAAAATGCTGGAGAAGACTTCGACTAGTTCGAGCGCCGCCGCCGGAGCTCCGGCGGAGGATTTGTTCCGTTCGACGGCAGATGTGGACTTGAT...

XM_057931887.1
TAAATACTCAAAACTTTGTGCCTTTTAAGACAATTTCTAGAAAATAAAGAAGAGAAGATCATAAGCAAAACCGTGTCGTTTGGGTGCAGAACGTCGCCGTTTTATGCACAGCACCCTCTGCTGCTGTGTTTCATCCCACATAGTAGAGGATCCGCACCCCAATCTCTTCCAGCTCCGGCGAAATACACGCGCAAAGCACAAAATGCTGGAGAAGACTTCGACTAGTTCGAGCGCCGCCGCCGGAGCTCCGGCGGAGGATT...

CDS

2 records

下载 CDS FASTA

LOC131005080
ATGCACAGCACCCTCTGCTGCTGTGTTTCATCCCACATAGTAGAGGATCCGCACCCCAATCTCTTCCAGCTCCGGCGAAATACACGCGCAAAGCACAAAATGCTGGAGAAGACTTCGACTAGTTCGAGCGCCGCCGCCGGAGCTCCGGCGGAGGATTTGTTCCGTTCGACGGCAGATGTGGACTTGATCGGAGATCCCTCCGGGTCTGCAACTGCTCAGGCGTTGAATTTCTCTTCCGGAAACCCTAGAATCGAAGAGAT...

Protein

2 records

下载 Protein FASTA

XP_057787869.1
MHSTLCCCVSSHIVEDPHPNLFQLRRNTRAKHKMLEKTSTSSSAAAGAPAEDLFRSTADVDLIGDPSGSATAQALNFSSGNPRIEEITGVMHLFRNDASSNELPVERNPLICVLGVPNHTTYADFCQFCGPFIQNMLEMRIVRTEGLEDSYSVLIRLDDQNNADSFYKQYNGKCFSSLEEETCRMFFTVDIQYTGSIEHSQPSSASSTELPTCPVCLERLDQDTAGILTTICNHSFHCSCMSKWTDSSCPVCRYCQQQPE...

XP_057787870.1
MHSTLCCCVSSHIVEDPHPNLFQLRRNTRAKHKMLEKTSTSSSAAAGAPAEDLFRSTADVDLIGDPSGSATAQALNFSSGNPRIEEITGVMHLFRNDASSNELPVERNPLICVLGVPNHTTYADFCQFCGPFIQNMLEMRIVRTEGLEDSYSVLIRLDDQNNADSFYKQYNGKCFSSLEEETCRMFFTVDIQYTGSIEHSQPSSASSTELPTCPVCLERLDQDTAGILTTICNHSFHCSCMSKWTDSSCPVCRYCQQQPE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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