Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004752`

染色体: Chr01 坐标: 65687230-65692154 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004752`
名称	SmilChr01G004752
描述	pyrophosphate-energized vacuolar membrane proton pump-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65687230 - 65692154 / `-`

ID 对照

NCBI Gene ID	`LOC131005094`
GeneID	`131005094`
locus_tag	`-`
NCBI Name	`LOC131005094`
原始查询	`SmilChr01G004752`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pyrophosphate-energized vacuolar membrane proton pump-like
产物	pyrophosphate-energized vacuolar membrane proton pump-like
Arabidopsis	`AT1G15690` (AVP1) Inorganic H pyrophosphatase family protein [Source:NCBI gene (formerly Entrezgene);Acc:838138] identity=92.6; qcov=0.896; evalue=0; confidence=high
Rice	`Os02g0802500` (OVP3) - identity=90.9; qcov=0.892; evalue=0; confidence=high
GO	GO:0004427 (inorganic diphosphate phosphatase activity); GO:0009678 (diphosphate hydrolysis-driven proton transmembrane transporter activity); GO:0016020 (membrane); GO:1902600 (proton transmembrane transport)
KEGG	-
Pfam	PF03030 (H_PPase)
InterPro	-
eggNOG	-
NR	GeneID:131005094

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	0.60000	`XP_057787886.1`
2	Endoplasmic reticulum	内质网	0.60000	`XP_057787887.1`
3	Vacuole membrane	液泡膜	0.60000	`XP_057787886.1`
4	Cell membrane	细胞膜	0.20000	`XP_057787886.1`
5	Chloroplast	叶绿体	0.20000	`XP_057787887.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:65687984`	`GA`	`G`	1bp_deletion	frameshift_variant	1	C32
`Chr1:65687984`	`GA`	`G`	1bp_deletion	CDS_variant	1	C32
`Chr1:65688116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr1:65688124`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A11,D11
`Chr1:65688262`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr1:65688328`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr1:65689745`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B47
`Chr1:65689861`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55
`Chr1:65690023`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C21
`Chr1:65690516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B29,B4,C30,D10,D6
`Chr1:65691680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr1:65691815`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A19,B124,B23,C61

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787886.1

765 aa

382

765

H_PPase

PF03030 H_PPase 43-750 aa

XP_057787887.1

766 aa

383

766

H_PPase

PF03030 H_PPase 77-751 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787886.1`	Pfam	`PF03030`	H_PPase	Family	43	750	2.6e-256	853.1	Inorganic H+ pyrophosphatase
`XP_057787887.1`	Pfam	`PF03030`	H_PPase	Family	77	751	7.9e-253	841.6	Inorganic H+ pyrophosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931903.1
TATTACACAAAGTTACGCTGCACCTTCACGTAGAGTAGCAGTGCTCTCTACACTTTACTAGGATTTATAATCCTATAAATATACTTCACCCGCCTTGCCCGAAAACCTCCTCAAATTCGTGAGACTCTTTCTGTCACTCTCATTCTCTCGCCGCTCTTTTTCTTTCAATTTTTTTTCCCTATTTTTTTATTTAATTCTCCCGGTATATTCCGGCGAGTTAGTTAGGGTTCTGGTAAGAATGGCATTGCTGTCAGATCTGG...

XM_057931904.1
TCTTGGAGTTGGAGCATGTGAGGTGCTTATGTTCCTGGGTTCTTCTATGCAGTTTTTCTTGAATACTATTTTCCTTGAGAAGATATAAAAGACTGCAGAGTATGTTCATTGCCCGTGGCAGGAAAAAATATTGACTATAGAATACATGTGGTGTGATGATAAAAGTATCTTTTATAAGTAATTCTATAGTATTATGTACAGCGACAAGATATCTGAGGAATATTGATGATATTAGTTCTCAGGTGTTTTTTATGCTGGTC...

CDS

2 records

下载 CDS FASTA

LOC131005094
ATGGCATTGCTGTCAGATCTGGGGACGGAGATCGTGATTCCGGCGTGCGCCGTCATCGGAATCATCTTCTCACTCGTTCAGTGGTTCGTCGTCTCCCGCGTCAAGGTCTCGGCAGAGCGCGCCGGAGACGCGGTGGCCAAGAACGGGAAGAATGGGTGCGCCGACTACTTGATTGAAGAGGAGGAAGCCATTAATGACCACAACGTCGTCGCCAAGTGCGCCGAGATTCAGAACGCCATTTCTGAGGGTGCTACATCTTT...

LOC131005094
ATGATAAAAGTATCTTTTATAAGTAATTCTATAGTATTATGTACAGCGACAAGATATCTGAGGAATATTGATGATATTAGTTCTCAGGTGTTTTTTATGCTGGTCCATTTTCTTGCCGTTCCCATCGTTCACATAGCTGAAAATACATTGTTGAATTCTATATATGGATTTGGAGGCACCTATAACTTATTTAATTGCAAAGCATTTTTGTTCAATGTTCTGCACAACCTAAATTGGTTAATTGACTTTGGTGCTACATC...

Protein

2 records

下载 Protein FASTA

XP_057787886.1
MALLSDLGTEIVIPACAVIGIIFSLVQWFVVSRVKVSAERAGDAVAKNGKNGCADYLIEEEEAINDHNVVAKCAEIQNAISEGATSFLFTEYQYVGIFMVAFAVLIFLFLGSVEGFSTSFRPCTYDQEKLCKPALATAIFSTVSFLLGAITSVVSGFLGMKIATYANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLYITINLFKIYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVGK...

XP_057787887.1
MIKVSFISNSIVLCTATRYLRNIDDISSQVFFMLVHFLAVPIVHIAENTLLNSIYGFGGTYNLFNCKAFLFNVLHNLNWLIDFGATSFLFTEYQYVGIFMVAFAVLIFLFLGSVEGFSTSFRPCTYDQEKLCKPALATAIFSTVSFLLGAITSVVSGFLGMKIATYANARTTLEARKGVGKAFIVAFRSGAVMGFLLAANGLLVLYITINLFKIYYGDDWEGLFEAITGYGLGGSSMALFGRVGGGIYTKAADVGADLVG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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