Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004756`

染色体: Chr01 坐标: 65758983-65762736 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004756`
名称	SmilChr01G004756
描述	DNA replication complex GINS protein SLD5-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	65758983 - 65762736 / `+`

ID 对照

NCBI Gene ID	`LOC131005099`
GeneID	`131005099`
locus_tag	`-`
NCBI Name	`LOC131005099`
原始查询	`SmilChr01G004756`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	DNA replication complex GINS protein SLD5-like
产物	DNA replication complex GINS protein SLD5-like
Arabidopsis	`AT5G49010` (SLD5) DNA replication protein-like protein [Source:NCBI gene (formerly Entrezgene);Acc:834960] identity=54.5; qcov=1; evalue=3.17e-80; confidence=high
Rice	`Os05g0143400` - identity=63.2; qcov=0.914; evalue=1.87e-75; confidence=high
GO	GO:0000727 (double-strand break repair via break-induced replication); GO:0000811 (GINS complex); GO:0006261 (DNA-templated DNA replication)
KEGG	-
Pfam	PF05916 (Sld5); PF16922 (SLD5_C)
InterPro	-
eggNOG	-
NR	GeneID:131005099

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057787892.1`
2	Chromosome	染色体	0.00000	`XP_057787892.1`
3	Centromere	着丝粒	0.00000	`XP_057787892.1`
4	Chromatin	染色质	0.00000	`XP_057787892.1`
5	Telomere	端粒	0.00000	`XP_057787892.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:65760217`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B23,C61,C78
`Chr1:65760301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B66
`Chr1:65761210`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:65761299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:65761602`	`GAT`	`G`	2bp_deletion	frameshift_variant	7	A21,B101,B128,B20,B28,C68,C78
`Chr1:65761627`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B124,B23,C61,C78
`Chr1:65761692`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B68
`Chr1:65762198`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B140,C2
`Chr1:65762299`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,C2
`Chr1:65762363`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787892.1

220 aa

110

220

Sld5

SLD5_C

PF05916 Sld5 72-134 aa PF16922 SLD5_C 166-220 aa

XP_057787893.1

220 aa

110

220

Sld5

SLD5_C

PF05916 Sld5 72-134 aa PF16922 SLD5_C 166-220 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787892.1`	Pfam	`PF05916`	Sld5	Domain	72	134	9.8e-10	39.3	GINS complex protein helical bundle domain
`XP_057787892.1`	Pfam	`PF16922`	SLD5_C	Domain	166	220	9.9e-18	64.9	DNA replication complex GINS protein SLD5 C-terminus
`XP_057787893.1`	Pfam	`PF05916`	Sld5	Domain	72	134	9.8e-10	39.3	GINS complex protein helical bundle domain
`XP_057787893.1`	Pfam	`PF16922`	SLD5_C	Domain	166	220	9.9e-18	64.9	DNA replication complex GINS protein SLD5 C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931909.1
GTTTCAGCAGTGGCCACCGCTTCACTCTCAGATTATTATTTGCTGCAATTCTTTTTAATTACTTCAGATATAGACAATTATCACTTGGCACTTTTCAATTTCAGCTTTCCAATAATAAGGAAGAAAAAAATTTATCCTATGGATTCGGGTGCAGGAGAAAGCTCTGCTGCCGACGACTATGAGTCGTTGATGTCGACGACCGACGCCGAGCGGCTGAAGAGCGCGTGGCGGAACGAGAAGGCGGCGCCTGAGATTCTCAC...

XM_057931910.1
ATATGCTATTAACCATGAAATATTTGGCATAACAAATATCCAAATTCTACACTGCCTAAAGACATAAGGGGATCTCGACCGTCCATTCCTTCCTGCATCTCAAATCCAACTGTGGCGATCATCAAGATTTTGGCGCCATTTCTTCACTAGCTTAATTCCCACTTAAAATTAGAAAAGAAAGGAAAAAATAACACATCTCTTTTGCAGGAAGAAAAAAATTTATCCTATGGATTCGGGTGCAGGAGAAAGCTCTGCTGCCG...

CDS

2 records

下载 CDS FASTA

LOC131005099
ATGGATTCGGGTGCAGGAGAAAGCTCTGCTGCCGACGACTATGAGTCGTTGATGTCGACGACCGACGCCGAGCGGCTGAAGAGCGCGTGGCGGAACGAGAAGGCGGCGCCTGAGATTCTCACATACGCCGCCGATTTGGTGCAGAGGTCGCGCCAACAGATCCAATTAATGGAAGAAATGGTGGATGAGATCAACAAGAATGGTGTCGATCCACTAACAGTATCTCTTTACCAGATGGACTTGGACAGGACCATGTTCTT...

Protein

2 records

下载 Protein FASTA

XP_057787892.1
MDSGAGESSAADDYESLMSTTDAERLKSAWRNEKAAPEILTYAADLVQRSRQQIQLMEEMVDEINKNGVDPLTVSLYQMDLDRTMFLLRSYLRTRLQKIEKYVFLIQKTAEQWNRLSKQEQKFASRFAGDIKHHLELSVLSRLPDQYQSHLRQSAASEDDDMVPEPQLDAYVVCRSKKYLGAFQLDDGGEEPIDIEADDLYALPYKSIKPLVESGQIDLV

XP_057787893.1
MDSGAGESSAADDYESLMSTTDAERLKSAWRNEKAAPEILTYAADLVQRSRQQIQLMEEMVDEINKNGVDPLTVSLYQMDLDRTMFLLRSYLRTRLQKIEKYVFLIQKTAEQWNRLSKQEQKFASRFAGDIKHHLELSVLSRLPDQYQSHLRQSAASEDDDMVPEPQLDAYVVCRSKKYLGAFQLDDGGEEPIDIEADDLYALPYKSIKPLVESGQIDLV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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