当前解析结果
SmilChr01G004763| 统一新 Gene ID | SmilChr01G004763 |
|---|---|
| 名称 | SmilChr01G004763 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65799425 - 65803507 / - |
| NCBI Gene ID | LOC131005105 |
|---|---|
| GeneID | 131005105 |
| locus_tag | - |
| NCBI Name | LOC131005105 |
| 原始查询 | SmilChr01G004763 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT1G58400 (AT1G58400)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:842209] identity=27.4; qcov=1.01; evalue=1.5e-82; confidence=low |
| Rice | Os07g0186500- identity=27.5; qcov=0.946; evalue=1.86e-67; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF18052 (Rx_N); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005105 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057787900.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057787900.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057787900.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057787900.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057787900.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65799851 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C80,D10 |
Chr1:65799863 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C80,D10 |
Chr1:65799892 |
C |
CCT |
2bp_insertion | frameshift_variant | 18 | A15,A16,A22,B20,B56,B62,B88,B96,C34,C44,C62,C63,C64,C66,C67,C80,C81,C86 |
Chr1:65799894 |
ATG |
A |
2bp_deletion | frameshift_variant | 17 | A15,A16,A22,B20,B56,B62,B88,B96,C34,C44,C62,C63,C64,C66,C67,C81,C86 |
Chr1:65799926 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C80,D10 |
Chr1:65800108 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B25,C80 |
Chr1:65800291 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B25,C80,D10 |
Chr1:65800295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B25,C80,D10 |
Chr1:65800442 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr1:65800443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B24,B46,B78 |
Chr1:65800448 |
T |
TC |
1bp_insertion | frameshift_variant | 1 | B89 |
Chr1:65800448 |
T |
TC |
1bp_insertion | CDS_variant | 1 | B89 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787900.1PF18052
Rx_N 5-86 aa
PF00931
NB-ARC 160-332 aa
PF23559
WHD_DRP 424-493 aa
PF23598
LRR_14 560-822 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787900.1 |
Pfam | PF18052 |
Rx_N | Domain | 5 | 86 | 7.4e-13 | 49.1 | Rx N-terminal domain |
XP_057787900.1 |
Pfam | PF00931 |
NB-ARC | Domain | 160 | 332 | 5.9e-42 | 143.9 | NB-ARC domain |
XP_057787900.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 424 | 493 | 6.5e-16 | 58.9 | Disease resistance protein Winged helix domain |
XP_057787900.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 560 | 822 | 2.4e-11 | 43.7 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。