当前解析结果
SmilChr01G004764| 统一新 Gene ID | SmilChr01G004764 |
|---|---|
| 名称 | SmilChr01G004764 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65835133 - 65838194 / + |
| NCBI Gene ID | LOC131005106 |
|---|---|
| GeneID | 131005106 |
| locus_tag | - |
| NCBI Name | LOC131005106 |
| 原始查询 | SmilChr01G004764 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=30.2; qcov=0.867; evalue=9.25e-78; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=29.1; qcov=0.945; evalue=3.76e-78; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005106 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057787901.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057787901.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057787901.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057787901.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057787901.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65835325 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A8,B117 |
Chr1:65835437 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr1:65835501 |
G |
GA |
1bp_insertion | frameshift_variant | 1 | B2 |
Chr1:65835501 |
G |
GA |
1bp_insertion | CDS_variant | 1 | B2 |
Chr1:65835504 |
ACC |
A |
2bp_deletion | frameshift_variant | 55 | A10,A11,A22,A9,B10,B100,B102,B103,B104,B114,B115,B122,B127,B129,B2,B20,B26,B32,B52,B53,B54,B58,B66,B68,B75,B76,B79,B8,B83,B9,B91,B94,B97,B98,C15,C16,C21,C3,C33,C37,C38,C4,C42,C44,C47,C5,C51,C59,C64,C66,C71,C86,C9,D11,D8 |
Chr1:65835508 |
T |
TGA |
2bp_insertion | frameshift_variant | 55 | A10,A11,A22,A9,B10,B100,B102,B103,B104,B114,B115,B122,B127,B129,B2,B20,B26,B32,B52,B53,B54,B58,B66,B68,B75,B76,B79,B8,B83,B9,B91,B94,B97,B98,C15,C16,C21,C3,C33,C37,C38,C4,C42,C44,C47,C5,C51,C59,C64,C66,C71,C86,C9,D11,D8 |
Chr1:65835622 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B117,C57,D10 |
Chr1:65835630 |
A |
ATG |
2bp_insertion | frameshift_variant | 3 | B125,B28,B73 |
Chr1:65835630 |
A |
ATG |
2bp_insertion | CDS_variant | 3 | B125,B28,B73 |
Chr1:65835636 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C50,C64 |
Chr1:65835697 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B127,B98 |
Chr1:65836409 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A8,B117,C57,D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787901.1PF00931
NB-ARC 145-320 aa
PF23559
WHD_DRP 404-475 aa
PF23598
LRR_14 536-800 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787901.1 |
Pfam | PF00931 |
NB-ARC | Domain | 145 | 320 | 1.4e-40 | 139.4 | NB-ARC domain |
XP_057787901.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 404 | 475 | 3.1e-14 | 53.5 | Disease resistance protein Winged helix domain |
XP_057787901.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 536 | 800 | 7.4e-17 | 61.8 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。