当前解析结果
SmilChr01G004765| 统一新 Gene ID | SmilChr01G004765 |
|---|---|
| 名称 | SmilChr01G004765 |
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 65846060 - 65848660 / + |
| NCBI Gene ID | LOC131011731 |
|---|---|
| GeneID | 131011731 |
| locus_tag | - |
| NCBI Name | LOC131011731 |
| 原始查询 | SmilChr01G004765 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative late blight resistance protein homolog R1A-10 |
| 产物 | putative late blight resistance protein homolog R1A-10 |
| Arabidopsis | AT3G50950 (ZAR1)HOPZ-ACTIVATED RESISTANCE 1 [Source:NCBI gene (formerly Entrezgene);Acc:824259] identity=26.3; qcov=0.903; evalue=1.27e-46; confidence=low |
| Rice | Os08g0424700 (P0456B03.103)- identity=27.1; qcov=0.998; evalue=6.06e-55; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131011731 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057795527.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057795527.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057795527.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057795527.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057795527.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:65846136 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B138,B69,C79 |
Chr1:65846750 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A14,B123,C1,C51,C67 |
Chr1:65846912 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C38,C86 |
Chr1:65846919 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | A11 |
Chr1:65846919 |
AC |
A |
1bp_deletion | CDS_variant | 1 | A11 |
Chr1:65847052 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C2 |
Chr1:65847094 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B32,B65,B87,C36,C59 |
Chr1:65847172 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A9,B127,B79,B98 |
Chr1:65847270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B32,B65,B87,C36,C59 |
Chr1:65847511 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B32,B65,B87,C36,C59 |
Chr1:65847532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B105,B138,B69,C79 |
Chr1:65847988 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B122,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057795527.1PF00931
NB-ARC 139-317 aa
PF23559
WHD_DRP 401-476 aa
PF23598
LRR_14 574-812 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057795527.1 |
Pfam | PF00931 |
NB-ARC | Domain | 139 | 317 | 2.1e-34 | 119.3 | NB-ARC domain |
XP_057795527.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 401 | 476 | 6.3e-12 | 46.1 | Disease resistance protein Winged helix domain |
XP_057795527.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 574 | 812 | 7.7e-15 | 55.2 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。