Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004811`

染色体: Chr01 坐标: 66311786-66315489 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004811`
名称	SmilChr01G004811
描述	autophagy-related protein 16
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	66311786 - 66315489 / `+`

ID 对照

NCBI Gene ID	`LOC131005146`
GeneID	`131005146`
locus_tag	`-`
NCBI Name	`LOC131005146`
原始查询	`SmilChr01G004811`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	autophagy-related protein 16
产物	autophagy-related protein 16
Arabidopsis	`AT5G50230` (AT5G50230) Transducin/WD40 repeat-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:835088] identity=70.1; qcov=1; evalue=0; confidence=high
Rice	`Os03g0746600` (OsWD40-91) - identity=55.5; qcov=1.01; evalue=0; confidence=high
GO	GO:0000045 (autophagosome assembly); GO:0000421 (autophagosome membrane); GO:0005515 (protein binding)
KEGG	smil04136 (Autophagy - other - Salvia miltiorrhiza (redroot sage)); smil04145 (Phagocytosis - Salvia miltiorrhiza (redroot sage))
Pfam	PF00400 (WD40); PF08614 (ATG16); PF12894 (ANAPC4_WD40)
InterPro	-
eggNOG	-
NR	GeneID:131005146

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.60000	`XP_057787946.1`
2	Cytosol	细胞质基质	0.60000	`XP_057787946.1`
3	Golgi apparatus	高尔基体	0.40000	`XP_057787946.1`
4	Cytoplasmic vesicle	细胞质囊泡	0.20000	`XP_057787946.1`
5	Trans-golgi network	Trans-golgi network	0.20000	`XP_057787946.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:66312249`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C11,C69
`Chr1:66313761`	`AC`	`A`	1bp_deletion	frameshift_variant	1	B65
`Chr1:66313761`	`AC`	`A`	1bp_deletion	CDS_variant	1	B65
`Chr1:66314473`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr1:66314959`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B114,C38,C75
`Chr1:66315181`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B55

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787946.1

509 aa

254

509

ATG16

WD40

ANAPC4_WD40

WD40

PF08614 ATG16 46-168 aa PF00400 WD40 216-253 aa PF00400 WD40 258-295 aa PF00400 WD40 300-338 aa PF00400 WD40 343-379 aa PF12894 ANAPC4_WD40 353-401 aa PF00400 WD40 383-416 aa PF00400 WD40 445-467 aa PF00400 WD40 472-509 aa

XP_057787947.1

502 aa

251

502

ATG16

WD40

ANAPC4_WD40

WD40

PF08614 ATG16 39-161 aa PF00400 WD40 209-246 aa PF00400 WD40 251-288 aa PF00400 WD40 293-331 aa PF00400 WD40 336-372 aa PF12894 ANAPC4_WD40 346-394 aa PF00400 WD40 376-409 aa PF00400 WD40 438-460 aa PF00400 WD40 465-502 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787946.1`	Pfam	`PF08614`	ATG16	Coiled-coil	46	168	2.2e-15	58.1	Autophagy protein 16 (ATG16)
`XP_057787946.1`	Pfam	`PF00400`	WD40	Repeat	216	253	2.4e-42	142.2	WD domain, G-beta repeat
`XP_057787946.1`	Pfam	`PF00400`	WD40	Repeat	258	295	2.4e-42	142.2	WD domain, G-beta repeat
`XP_057787946.1`	Pfam	`PF00400`	WD40	Repeat	300	338	2.4e-42	142.2	WD domain, G-beta repeat
`XP_057787946.1`	Pfam	`PF00400`	WD40	Repeat	343	379	2.4e-42	142.2	WD domain, G-beta repeat
`XP_057787946.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	353	401	1.7e-16	60.9	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057787946.1`	Pfam	`PF00400`	WD40	Repeat	383	416	2.4e-42	142.2	WD domain, G-beta repeat
`XP_057787946.1`	Pfam	`PF00400`	WD40	Repeat	445	467	2.4e-42	142.2	WD domain, G-beta repeat
`XP_057787946.1`	Pfam	`PF00400`	WD40	Repeat	472	509	2.4e-42	142.2	WD domain, G-beta repeat
`XP_057787947.1`	Pfam	`PF08614`	ATG16	Coiled-coil	39	161	1.6e-15	58.6	Autophagy protein 16 (ATG16)
`XP_057787947.1`	Pfam	`PF00400`	WD40	Repeat	209	246	2.1e-42	142.4	WD domain, G-beta repeat
`XP_057787947.1`	Pfam	`PF00400`	WD40	Repeat	251	288	2.1e-42	142.4	WD domain, G-beta repeat
`XP_057787947.1`	Pfam	`PF00400`	WD40	Repeat	293	331	2.1e-42	142.4	WD domain, G-beta repeat
`XP_057787947.1`	Pfam	`PF00400`	WD40	Repeat	336	372	2.1e-42	142.4	WD domain, G-beta repeat
`XP_057787947.1`	Pfam	`PF12894`	ANAPC4_WD40	Repeat	346	394	1.6e-16	61.1	Anaphase-promoting complex subunit 4 WD40 domain
`XP_057787947.1`	Pfam	`PF00400`	WD40	Repeat	376	409	2.1e-42	142.4	WD domain, G-beta repeat
`XP_057787947.1`	Pfam	`PF00400`	WD40	Repeat	438	460	2.1e-42	142.4	WD domain, G-beta repeat
`XP_057787947.1`	Pfam	`PF00400`	WD40	Repeat	465	502	2.1e-42	142.4	WD domain, G-beta repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931963.1
TTGTACAAGTAGAATTTTGGTGAGTCAATAATTAGATTCCCCCGACCCTTTTCGGTAACCCTTACCCGCTCCGAGAGATTACCTTGACCGCGCAGCATCACAATCAGTAACTACAGCAATTCCATTAACTTCCAAGCAAACTCTTCAGCAATAAAAATTCACGAACAAATCCAAGATCAATTTTTTTCTCCGAATCCTTCGTCACCAAGCCCTCAAATTCAATTACTGGTTCCCGTATTCGAAACCCTAAACCCCAGTTC...

XM_057931964.1
GTAGAATTTTGGTGAGTCAATAATTAGATTCCCCCGACCCTTTTCGGTAACCCTTACCCGCTCCGAGAGATTACCTTGACCGCGCAGCATCACAATCAGTAACTACAGCAATTCCATTAACTTCCAAGCAAACTCTTCAGCAATAAAAATTCACGAACAAATCCAAGATCAATTTTTTTCTCCGAATCCTTCGTCACCAAGCCCTCAAATTCAATTACTGGTTCCCGTATTCGAAACCCTAAACCCCAGTTCTTCAATTT...

CDS

2 records

下载 CDS FASTA

LOC131005146
ATGGCGCAAGGAGATGTAGCAATGGAAGCAATAAAACATGCTCTGAAAGCTCTGAGAAAGCGGCATTTAGTGGAAGAGGGTGCGCATTCACATGCTTTTATTGCGCTATCTCGCCCGATTGTGTCTCAGGGGTCAGAGTGGAAAGAGAAAGCTGAAAATCTTGAATTGGAGCTCCAGCAATGCTACAAAGCCCAGTCTAGATTATCTGAACAACTTGTGGTGGAAGTTGCCGAATCCAGAACTTTGAAAGCACTAATGCA...

LOC131005146
ATGGAAGCAATAAAACATGCTCTGAAAGCTCTGAGAAAGCGGCATTTAGTGGAAGAGGGTGCGCATTCACATGCTTTTATTGCGCTATCTCGCCCGATTGTGTCTCAGGGGTCAGAGTGGAAAGAGAAAGCTGAAAATCTTGAATTGGAGCTCCAGCAATGCTACAAAGCCCAGTCTAGATTATCTGAACAACTTGTGGTGGAAGTTGCCGAATCCAGAACTTTGAAAGCACTAATGCAAGAGAAAGAAACTGCGATATC...

Protein

2 records

下载 Protein FASTA

XP_057787946.1
MAQGDVAMEAIKHALKALRKRHLVEEGAHSHAFIALSRPIVSQGSEWKEKAENLELELQQCYKAQSRLSEQLVVEVAESRTLKALMQEKETAISELQNELTQARDECSRLAVLLEEKTKALELLISEHQEVKGQLEATTLRADNAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVDRLKQSSMEHLAHQQVDGVVRRCEEGAEYYVESTVPSTCKQRIPAHDGGCTSILFEHNSSKLVSGGQDKAVKMWDANTGSST...

XP_057787947.1
MEAIKHALKALRKRHLVEEGAHSHAFIALSRPIVSQGSEWKEKAENLELELQQCYKAQSRLSEQLVVEVAESRTLKALMQEKETAISELQNELTQARDECSRLAVLLEEKTKALELLISEHQEVKGQLEATTLRADNAEAENKMLIDRWMLEKMKDAERLNEANALYEDMVDRLKQSSMEHLAHQQVDGVVRRCEEGAEYYVESTVPSTCKQRIPAHDGGCTSILFEHNSSKLVSGGQDKAVKMWDANTGSSTRTLYGCL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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