Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004813`

染色体: Chr01 坐标: 66320823-66324495 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004813`
名称	SmilChr01G004813
描述	sabinene synthase 1, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	66320823 - 66324495 / `+`

ID 对照

NCBI Gene ID	`LOC131005150`
GeneID	`131005150`
locus_tag	`-`
NCBI Name	`LOC131005150`
原始查询	`SmilChr01G004813`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sabinene synthase 1, chloroplastic-like
产物	sabinene synthase 1%2C chloroplastic-like
Arabidopsis	`AT4G16740` (TPS03) terpene synthase 03 [Source:NCBI gene (formerly Entrezgene);Acc:827377] identity=43.2; qcov=0.754; evalue=5.88e-97; confidence=medium
Rice	`Os03g0362500` - identity=34.4; qcov=0.659; evalue=1.14e-55; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131005150

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	1.00000	`XP_057787951.1`
2	Chloroplast stroma	叶绿体基质	0.40000	`XP_057787951.1`
3	Cytosol	细胞质基质	0.20000	`XP_057787950.1`
4	Nucleus	细胞核	0.00000	`XP_057787951.1`
5	Chromosome	染色体	0.00000	`XP_057787951.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:66320917`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	B32
`Chr1:66320917`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr1:66322577`	`AG`	`A`	1bp_deletion	frameshift_variant	82	A11,A2,A22,A5,A8,A9,B102,B103,B104,B105,B107,B115,B117,B118,B126,B127,B128,B13,B135,B136,B138,B140,B16,B18,B20,B24,B26,B29,B32,B33,B35,B48,B50,B53,B54,B58,B61,B65,B69,B71,B75,B76,B79,B83,B86,B88,B9,B98,C12,C15,C21,C22,C27,C29,C3,C30,C37,C41,C42,C44,C45,C47,C51,C52,C57,C58,C60,C62,C64,C66,C71,C75,C77,C79,C80,C83,C86,C9,D10,D11,D2,D8
`Chr1:66322605`	`A`	`AG`	1bp_insertion	frameshift_variant	2	B12,B55
`Chr1:66322605`	`A`	`AG`	1bp_insertion	CDS_variant	2	B12,B55
`Chr1:66322630`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr1:66322636`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr1:66322849`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr1:66322882`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A18,B102,C3,C62
`Chr1:66323264`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C47,C83,C86
`Chr1:66323327`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr1:66323379`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787950.1

598 aa

299

598

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 62-245 aa PF03936 Terpene_synth_C 302-541 aa PF19086 Terpene_syn_C_2 344-541 aa

XP_057787951.1

495 aa

248

495

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 62-245 aa PF03936 Terpene_synth_C 302-419 aa PF19086 Terpene_syn_C_2 344-420 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787950.1`	Pfam	`PF01397`	Terpene_synth	Repeat	62	245	3.6e-46	158.0	Terpene synthase, N-terminal domain
`XP_057787950.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	302	541	1.9e-86	290.0	Terpene synthase family, metal binding domain
`XP_057787950.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	344	541	1.6e-59	201.7	Terpene synthase family 2, C-terminal metal binding
`XP_057787951.1`	Pfam	`PF01397`	Terpene_synth	Repeat	62	245	2.4e-46	158.5	Terpene synthase, N-terminal domain
`XP_057787951.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	302	419	2e-40	139.3	Terpene synthase family, metal binding domain
`XP_057787951.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	344	420	1.1e-15	58.7	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057931968.1
ATAAATACAGGTATCCCAATTCCAACACAAAGAAAGCAGTTAAAGAGAGAAAAAGCAAATCAAGATTAATCTGAAAATGCTTAGTTTTATGACGCAAATGGCGATTCCTTGCATCCCAACTAATCATCTCCACAACTCACGTAGCAGCAAGTCTTCAAAACTCTGTAGTAGCAGAATCAGTATAGGTCGTTGCTCCTCGCAACTAAGCGATGATCATCTCCCAATCCAACGACGATCTGGAAACTACAGTCCTTCCGGTT...

XM_057931967.1
AATACAGGTATCCCAATTCCAACACAAAGAAAGCAGTTAAAGAGAGAAAAAGCAAATCAAGATTAATCTGAAAATGCTTAGTTTTATGACGCAAATGGCGATTCCTTGCATCCCAACTAATCATCTCCACAACTCACGTAGCAGCAAGTCTTCAAAACTCTGTAGTAGCAGAATCAGTATAGGTCGTTGCTCCTCGCAACTAAGCGATGATCATCTCCCAATCCAACGACGATCTGGAAACTACAGTCCTTCCGGTTGGG...

CDS

2 records

下载 CDS FASTA

LOC131005150
ATGCTTAGTTTTATGACGCAAATGGCGATTCCTTGCATCCCAACTAATCATCTCCACAACTCACGTAGCAGCAAGTCTTCAAAACTCTGTAGTAGCAGAATCAGTATAGGTCGTTGCTCCTCGCAACTAAGCGATGATCATCTCCCAATCCAACGACGATCTGGAAACTACAGTCCTTCCGGTTGGGATGTCGATCATATCCAATCACTCCAAAGTCATTATACGGATGAAAAGTACGTGAAAAGAACTAGTGAGCTCAT...

Protein

2 records

下载 Protein FASTA

XP_057787950.1
MLSFMTQMAIPCIPTNHLHNSRSSKSSKLCSSRISIGRCSSQLSDDHLPIQRRSGNYSPSGWDVDHIQSLQSHYTDEKYVKRTSELIMQVKKMLEKETDSIQQLELIDDLQRLGLSHQFHKEFKQILNSVYLDNKYYKNGEIIMQEAGERDLNSTALAFRLLRQHGFQVAQEVFECFKSEEGEFKASLRDDTRGLLQLYEASFLSMEGENTLDIAREFTIEILQEKLVNNEIDDSNLITWIRHSLEIPIYWSIVRVNTSV...

XP_057787951.1
MLSFMTQMAIPCIPTNHLHNSRSSKSSKLCSSRISIGRCSSQLSDDHLPIQRRSGNYSPSGWDVDHIQSLQSHYTDEKYVKRTSELIMQVKKMLEKETDSIQQLELIDDLQRLGLSHQFHKEFKQILNSVYLDNKYYKNGEIIMQEAGERDLNSTALAFRLLRQHGFQVAQEVFECFKSEEGEFKASLRDDTRGLLQLYEASFLSMEGENTLDIAREFTIEILQEKLVNNEIDDSNLITWIRHSLEIPIYWSIVRVNTSV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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