Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004841`

染色体: Chr01 坐标: 66534842-66542217 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004841`
名称	SmilChr01G004841
描述	cineole synthase 1, chloroplastic-like
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	66534842 - 66542217 / `-`

ID 对照

NCBI Gene ID	`LOC131005178`
GeneID	`131005178`
locus_tag	`-`
NCBI Name	`LOC131005178`
原始查询	`SmilChr01G004841`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cineole synthase 1, chloroplastic-like
产物	cineole synthase 1%2C chloroplastic-like
Arabidopsis	`AT2G24210` (TPS10) terpene synthase 10 [Source:NCBI gene (formerly Entrezgene);Acc:816955] identity=43.7; qcov=0.979; evalue=3.71e-150; confidence=medium
Rice	`Os08g0168000` (OsTPS31) - identity=30; qcov=0.911; evalue=6.69e-76; confidence=low
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	-
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131005178

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Chloroplast	叶绿体	0.80000	`XP_057787993.1`
2	Cytosol	细胞质基质	0.20000	`XP_057787993.1`
3	Chloroplast stroma	叶绿体基质	0.20000	`XP_057787993.1`
4	Nucleus	细胞核	0.00000	`XP_057787993.1`
5	Chromosome	染色体	0.00000	`XP_057787993.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:66539474`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B4
`Chr1:66539498`	`AG`	`A`	1bp_deletion	frameshift_variant	18	A10,A15,B118,B128,B24,B29,B40,B45,B52,B61,B76,B8,C12,C27,C30,C52,C62,C77
`Chr1:66539614`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B125,B92
`Chr1:66539645`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B16,B74,C45
`Chr1:66539661`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B62
`Chr1:66539814`	`CAA`	`C`	2bp_deletion	frameshift_variant	2	B133,C74
`Chr1:66539814`	`CAA`	`C`	2bp_deletion	CDS_variant	2	B133,C74
`Chr1:66539824`	`G`	`GTA`	2bp_insertion	frameshift_variant	13	A14,B119,B120,B129,B18,B55,C1,C27,C51,C57,C67,C84,D7
`Chr1:66539853`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B90
`Chr1:66539875`	`G`	`GA`	1bp_insertion	frameshift_variant	146	A1,A10,A11,A14,A16,A18,A19,A2,A20,A23,A25,A4,A8,A9,B10,B100,B102,B104,B106,B109,B110,B113,B114,B117,B119,B12,B120,B122,B124,B125,B126,B127,B129,B130,B131,B134,B135,B136,B139,B140,B18,B19,B2,B21,B22,B24,B27,B28,B29,B3,B31,B32,B33,B36,B38,B39,B4,B41,B43,B45,B46,B47,B48,B49,B5,B50,B55,B56,B6,B61,B62,B64,B65,B66,B71,B73,B76,B78,B79,B8,B80,B84,B90,B91,B92,B93,B96,B98,B99,C1,C10,C11,C13,C16,C18,C2,C20,C21,C23,C25,C26,C27,C29,C30,C31,C32,C33,C35,C36,C37,C40,C44,C46,C47,C50,C51,C53,C54,C55,C56,C57,C58,C6,C60,C62,C65,C67,C68,C69,C7,C71,C72,C75,C80,C84,C85,C86,C9,D1,D11,D2,D3,D4,D6,D7,D9
`Chr1:66539899`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B41,C11,C26,C69
`Chr1:66539912`	`GAT`	`G`	2bp_deletion	frameshift_variant	1	D1

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057787993.1

579 aa

290

579

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 59-217 aa PF03936 Terpene_synth_C 283-520 aa PF19086 Terpene_syn_C_2 321-519 aa

XP_057787994.1

575 aa

288

575

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 60-213 aa PF03936 Terpene_synth_C 279-516 aa PF19086 Terpene_syn_C_2 317-515 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057787993.1`	Pfam	`PF01397`	Terpene_synth	Repeat	59	217	5.2e-41	141.2	Terpene synthase, N-terminal domain
`XP_057787993.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	283	520	1.6e-89	300.1	Terpene synthase family, metal binding domain
`XP_057787993.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	321	519	7.8e-58	196.2	Terpene synthase family 2, C-terminal metal binding
`XP_057787994.1`	Pfam	`PF01397`	Terpene_synth	Repeat	60	213	8.2e-40	137.2	Terpene synthase, N-terminal domain
`XP_057787994.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	279	516	1.6e-89	300.1	Terpene synthase family, metal binding domain
`XP_057787994.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	317	515	7.9e-58	196.2	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009095213.1
CATTCTGTCACTTTCTTCCTTTCGTGACGTTTCCATTCTCCATCAACATATGCATATTGAGGATCATCGAAAAACCAAGCAACGAATTAGAGAGGAAGATGTGCAGCGTGATTATGCCAATAAACCATCTTCATAATTACTCACACACCAAGTCTTCAAGACTGCGGTGTGTCGACGCTTCTTCCCGACTGCCACGGCCGCCGCCTTGCTCTTTACAACTCACTGATCGTCACATGCAAACGGGACGACCATCTGGTGGA...

XR_009095212.1
CATTCTGTCACTTTCTTCCTTTCGTGACGTTTCCATTCTCCATCAACATATGCATATTGAGGATCATCGAAAAACCAAGCAACGAATTAGAGAGGAAGATGTGCAGCGTGATTATGCCAATAAACCATCTTCATAATTACTCACACACCAAGTCTTCAAGACTGCGGTGTGTCGACGCTTCTTCCCGACTGCCACGGCCGCCGCCTTGCTCTTTACAACTCACTGATCGTCACATGCAAACGGGACGACCATCTGGTGGA...

CDS

2 records

下载 CDS FASTA

LOC131005178
ATGTGCAGCGTGATTATGCCAATAAACCATCTTCATAATTACTCACACACCAAGTCTTCAAGACTGCGGTGTGTCGACGCTTCTTCCCGACTGCCACGGCCGCCGCCTTGCTCTTTACAACTCACTGATCGTCACATGCAAACGGGACGACCATCTGGTGGATACCGTCCTGCCATTTGGGATTTCCACTACATCCAAGCTCTAAACTCTGAGTATAAGCTGGTTAGGGCCGCAGGTATGATTGCTCAAGTGAAGAAGAT...

Protein

2 records

下载 Protein FASTA

XP_057787993.1
MCSVIMPINHLHNYSHTKSSRLRCVDASSRLPRPPPCSLQLTDRHMQTGRPSGGYRPAIWDFHYIQALNSEYKEEKQLVRAAGMIAQVKKMLLQEQVVCIRRLELIDELRRLGISFHFHHEIAQIFNSNNKHTHERDLYSTALRFRLLRQHGFTVSQEVFDCFKNDKGTDFEPSLCDDTKGLVQLYEASFLSVHGEETLDLAREFATKFLQKRIVVDDEVERALEWPTHWRVQMPNATSFIDAYKRRADMNPIVLGLAKL...

XP_057787994.1
MCSVIMPINHLHNYSHTKSSRLRCVDASSRLPRPPPCSLQLTDRHMQTGRPSGGYRPAIWDFHYIQALNSEYKLVRAAGMIAQVKKMLLQEQVVCIRRLELIDELRRLGISFHFHHEIAQIFNSNNKHTHERDLYSTALRFRLLRQHGFTVSQEVFDCFKNDKGTDFEPSLCDDTKGLVQLYEASFLSVHGEETLDLAREFATKFLQKRIVVDDEVERALEWPTHWRVQMPNATSFIDAYKRRADMNPIVLGLAKLDINI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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