当前解析结果
SmilChr01G004842| 统一新 Gene ID | SmilChr01G004842 |
|---|---|
| 名称 | SmilChr01G004842 |
| 描述 | L-type lectin-domain containing receptor kinase IX.1-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 66548546 - 66550873 / - |
| NCBI Gene ID | LOC131005180 |
|---|---|
| GeneID | 131005180 |
| locus_tag | - |
| NCBI Name | LOC131005180 |
| 原始查询 | SmilChr01G004842 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | L-type lectin-domain containing receptor kinase IX.1-like |
| 产物 | L-type lectin-domain containing receptor kinase IX.1-like |
| Arabidopsis | AT5G10530 (AT5G10530)Concanavalin A-like lectin protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830918] identity=48; qcov=0.965; evalue=0; confidence=high |
| Rice | Os07g0569550 (OJ1019_E02.19)- identity=48.3; qcov=1.01; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005524 (ATP binding); GO:0005886 (plasma membrane); GO:0006468 (protein phosphorylation); GO:0030246 (carbohydrate binding) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00139 (Lectin_legB); PF07714 (PK_Tyr_Ser-Thr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131005180 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057787997.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057787997.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057787997.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057787997.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057787997.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:66548820 |
C |
CA |
1bp_insertion | frameshift_variant | 46 | A10,A11,A19,A2,A21,A3,B10,B100,B101,B104,B117,B120,B129,B131,B133,B139,B17,B19,B20,B32,B39,B50,B51,B70,B82,B85,B87,B88,B94,C1,C11,C13,C17,C35,C5,C61,C64,C66,C69,C70,C73,C74,C75,C87,C9,D3 |
Chr1:66548899 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B66 |
Chr1:66549224 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A4,B11,B132,B64,C35 |
Chr1:66549248 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B126,C10,C18,C54 |
Chr1:66549424 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B62 |
Chr1:66549441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B4,C36,D6 |
Chr1:66549443 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B62 |
Chr1:66549507 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B104 |
Chr1:66549507 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B104 |
Chr1:66549623 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A19,B10,B104,B64,B78 |
Chr1:66549711 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,B62 |
Chr1:66549715 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057787997.1PF00139
Lectin_legB 24-269 aa
PF00069
Pkinase 361-621 aa
PF07714
PK_Tyr_Ser-Thr 364-623 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057787997.1 |
Pfam | PF00139 |
Lectin_legB | Domain | 24 | 269 | 9.3e-63 | 212.8 | Legume lectin domain |
XP_057787997.1 |
Pfam | PF00069 |
Pkinase | Domain | 361 | 621 | 9.7e-47 | 160.3 | Protein kinase domain |
XP_057787997.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 364 | 623 | 1.4e-48 | 166.2 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。