Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr01G004857`

染色体: Chr01 坐标: 66736214-66739612 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr01G004857`
名称	SmilChr01G004857
描述	protein RMD5 homolog
染色体 / SeqID	Chr01 / NC_080387.1
坐标与链方向	66736214 - 66739612 / `-`

ID 对照

NCBI Gene ID	`LOC131005193`
GeneID	`131005193`
locus_tag	`-`
NCBI Name	`LOC131005193`
原始查询	`SmilChr01G004857`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein RMD5 homolog
产物	protein RMD5 homolog
Arabidopsis	`AT4G37880` (AT4G37880) LisH/CRA/RING-U-box domains-containing protein [Source:NCBI gene (formerly Entrezgene);Acc:829944] identity=47.3; qcov=1.01; evalue=8.03e-134; confidence=high
Rice	`Os06g0588900` - identity=53.4; qcov=1; evalue=2.71e-153; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0034657 (GID complex); GO:0043161 (proteasome-mediated ubiquitin-dependent protein catabolic process); GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF10607 (CTLH); PF13445 (zf-RING_UBOX)
InterPro	-
eggNOG	-
NR	GeneID:131005193

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057788009.1`
2	Cytoplasm	细胞质	1.00000	`XP_057788009.1`
3	Cytosol	细胞质基质	1.00000	`XP_057788009.1`
4	Nucleoplasm	核质	0.40000	`XP_057788009.1`
5	Chromosome	染色体	0.00000	`XP_057788009.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr1:66736411`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr1:66736467`	`TCG`	`T`	2bp_deletion	frameshift_variant	1	B93
`Chr1:66736467`	`TCG`	`T`	2bp_deletion	CDS_variant	1	B93
`Chr1:66736504`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B86,B9,C44
`Chr1:66736513`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B52,B8
`Chr1:66736657`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr1:66736660`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C47,C83,C86
`Chr1:66736753`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C42
`Chr1:66736768`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A10,B52,B76,B8
`Chr1:66736769`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B41,C11,C40,C69
`Chr1:66736777`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A19
`Chr1:66736853`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B131,C2,C23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057788009.1

385 aa

192

385

CTLH

zf-RING_UBOX

PF10607 CTLH 149-290 aa PF13445 zf-RING_UBOX 328-369 aa

XP_057788010.1

385 aa

192

385

CTLH

zf-RING_UBOX

PF10607 CTLH 149-290 aa PF13445 zf-RING_UBOX 328-369 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057788009.1`	Pfam	`PF10607`	CTLH	Domain	149	290	2.4e-34	119.3	CTLH/CRA C-terminal to LisH motif domain
`XP_057788009.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	328	369	5e-10	39.9	RING-type zinc-finger
`XP_057788010.1`	Pfam	`PF10607`	CTLH	Domain	149	290	2.4e-34	119.3	CTLH/CRA C-terminal to LisH motif domain
`XP_057788010.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	328	369	5e-10	39.9	RING-type zinc-finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057932026.1
TAATTGCCACTTATTGTTGTAAGGGGCAAATTCGGAAATACAGGTTATCCGCACGTGTCGTCAGCTTCACACAGAAGGAGTCGAAATTCTTTCTCGCTCAGAATTTTCAATCACGCCCATCCTCTTTCTTTCTTCTCACTACCCTGCTGCTTCCGCTACATATTGATAATTCCGCAATCACCAAACAAGAAAAGCTTAAATCCCCTTTCTTGATTAGTGCAATATGGAGCTCAATGTTATACAAGATTCATTTGAGAGGG...

XM_057932027.1
GCAAATTCGGAAATACAGGTTATCCGCACGTGTCGTCAGCTTCACACAGAAGGAGTCGAAATTCTTTCTCGCTCAGAATTTTCAATCACGCCCATCCTCTTTCTTTCTTCTCACTACCCTGCTGCTTCCGCTACATATTGATAATTCCGCAATCACCAAACAAGAAAAGCTTAAATCCCCTTTCTTGATTAGGAACCGTCTGCCTTTTCTTACTCTCGTTGGATTGGAGCTTCTTGGTGGATTGGTGTATTACTAATCTT...

CDS

2 records

下载 CDS FASTA

LOC131005193
ATGGAGCTCAATGTTATACAAGATTCATTTGAGAGGGTTGCAAAGAGACAAAAGTTGTCATCTTCAAAATCCCAAGAAATGATCACCCAAGTTGGCTATGAAATTGAACAGGCACTGGCAAGAATACAATCAAGTAGTGATTCTACTGTTGCGGTTGATCAGAAGACAGTTCTTGCTGAACTGAAAGCCAAGCTTCAGGTTGTTGGTTCACACACTCATTTAGAGGGACCGCAGCGAGAGCTTAACACAAATCTCAGCAG...

Protein

2 records

下载 Protein FASTA

XP_057788009.1
MELNVIQDSFERVAKRQKLSSSKSQEMITQVGYEIEQALARIQSSSDSTVAVDQKTVLAELKAKLQVVGSHTHLEGPQRELNTNLSRYQKVLEKAMHPDISKGCVDVDFDRHILNQIIICHFYFEGLFDIVDCLVKEAGEPEAISLRLQYQEIHQILEALKSRDLGPASKWISANKERLNESGSDLELKLHKLHFVDLLQSKGRADALRYAKTYLAPLASCHMKEIQRLLCSVLWAGRLDRSPYADLADPSHWENFAEEV...

XP_057788010.1
MELNVIQDSFERVAKRQKLSSSKSQEMITQVGYEIEQALARIQSSSDSTVAVDQKTVLAELKAKLQVVGSHTHLEGPQRELNTNLSRYQKVLEKAMHPDISKGCVDVDFDRHILNQIIICHFYFEGLFDIVDCLVKEAGEPEAISLRLQYQEIHQILEALKSRDLGPASKWISANKERLNESGSDLELKLHKLHFVDLLQSKGRADALRYAKTYLAPLASCHMKEIQRLLCSVLWAGRLDRSPYADLADPSHWENFAEEV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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